Gimesia maris: GmarT_13400
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Entry
GmarT_13400 CDS
T06180
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gmr
Gimesia maris
Brite
KEGG Orthology (KO) [BR:
gmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gmr03016
]
GmarT_13400 (rtcB)
Enzymes [BR:
gmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GmarT_13400 (rtcB)
Transfer RNA biogenesis [BR:
gmr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GmarT_13400 (rtcB)
Prokaryotic type
tRNA splicing ligases
GmarT_13400 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEG15500
UniProt:
A0ABX5YII2
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All DBs
Position
1702087..1703490
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AA seq
467 aa
AA seq
DB search
MNSRQLLKIGVPEYCLKTAKTAIQMKVAEEKANGKVRGKELKELVQKVVEHPEEYLDDAA
FRQLALELVDDNSEEAVEPITYQIWGKEGIDEGAFSQMDLACHVPSAWGAALMPDAHIGY
GLPIGGVLALEDAVIPYAVGVDIACRMKLSVLDISVSKLNQKHHQFVDALNRGTVFGVGQ
AHEKRQRHAVMDEDWSVTKITRQNKDKAWKQLGSSGSGNHFVEFGVLTIAQDDQELGLDA
GEYVALLSHSGSRGTGASVCSTYSGIAQARLRKRHHQLGRLAWLEMDSEAGQEYWAAMNL
MGDYAAANHAVIHQNVSEILGSKVISGVENHHNFAWKEEHDGKEVYVHRKGATPAAAGEL
GVIPGSMADPAFVVRGKGNPASLNSASHGAGRCMSRNKAKDKYRWNAVKNDLAKRGITVI
SAGADEVPGVYKNINEVMAEQQDLVEIVARFNPKVVKMCGDGSRAED
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaattctcgacagttactgaaaatcggagtgcctgaatattgtctgaagactgcaaaa
acagcgattcagatgaaagtcgccgaggaaaaagcgaatggcaaagtgcgcggtaaagaa
ctgaaagaactcgtacagaaagtggtagaacaccctgaagagtatctggatgatgctgct
tttcggcaattggcgctggaactggtagacgacaacagcgaagaagcggttgaaccgatt
acttaccagatctggggtaaagagggcatcgatgaaggtgcgttttcacagatggatctg
gcatgtcatgtgccttccgcgtggggtgccgcgctgatgcctgatgcgcacatcggatat
ggactgcctattggtggcgtactggcgctggaagatgcagtgattccttacgccgtcggt
gtggacatcgcctgtcgtatgaagctgtctgtgctggatatttcggtgagcaagctgaac
cagaaacatcaccagtttgtggatgcgctgaatcggggaaccgtgtttggcgtaggccag
gcgcatgaaaaacgtcagcggcatgccgtgatggatgaggactggtcagtgacaaaaatc
acgcgccagaacaaagacaaagcctggaagcagttggggtcttccggttcgggaaatcat
tttgtggaatttggtgtgctgaccattgcgcaggatgatcaggaactcgggctggacgcc
ggcgagtatgtggcgctgttaagccatagtggaagtcggggaacgggtgcttcggtatgc
agtacttattctggaattgcccaggcacgtctgcggaaacgacatcatcaactgggacga
ctggcatggctggagatggattccgaggcaggccaggaatactgggcggcgatgaatttg
atgggtgattatgcggctgcgaatcatgccgtgattcatcaaaatgtatcagagattctg
ggaagcaaggtgatttccggcgtggaaaatcatcataactttgcctggaaggaagagcat
gacggaaaagaagtttacgtgcatcgcaagggggcaactccagcggcggccggtgagctg
ggtgtgattcccggttccatggctgatccggcatttgtggtgcgcggaaaaggaaatccg
gcaagcttgaattccgcttcgcatggagcaggtcgttgtatgtcgcgtaataaagccaag
gataagtatcgctggaatgcagtgaaaaatgatctggccaaacgcggcatcactgtgatt
tcggcgggcgctgatgaagttcccggtgtttacaaaaacatcaatgaagtcatggccgag
cagcaggacctggtggaaatcgtagcacgctttaatccgaaagtggttaagatgtgcggt
gatggaagccgtgccgaagactga
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