Gimesia maris: GmarT_43320
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Entry
GmarT_43320 CDS
T06180
Symbol
rpoA_2
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gmr
Gimesia maris
Pathway
gmr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gmr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GmarT_43320 (rpoA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmr03021
]
GmarT_43320 (rpoA_2)
03400 DNA repair and recombination proteins [BR:
gmr03400
]
GmarT_43320 (rpoA_2)
Enzymes [BR:
gmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GmarT_43320 (rpoA_2)
Transcription machinery [BR:
gmr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GmarT_43320 (rpoA_2)
DNA repair and recombination proteins [BR:
gmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GmarT_43320 (rpoA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_1
TPR_8
TPR_19
TPR_16
TPR_14
TPR_12
ANAPC3
TPR_9
SAM_EPH
ARM_TT21_N
TPR_CcmH_CycH
TPR-S
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-ProteinID:
QEG18443
LinkDB
All DBs
Position
complement(5625808..5627133)
Genome browser
AA seq
441 aa
AA seq
DB search
MSVDELIDVKSVLQSSEGVGYSDIERLSQIVCSDQVSELNNEVQALIRSISEGQASAGLS
ARAGIALHLLGKHKEAVTQLEKVQDNATACFYQAVSLIALKRYAEADQKLEAAAKLGYDS
IECSLRRAETLRLVGKLDDAESVLGTISKDAAGRAEYSFQMGCIRSDRGDLYGAIEYFER
AVDMDPRHSRAIFRLAGENASRGNDEDAIRLYEQSLSSPPFYLGAILNLGLLYEDMENYP
AAAFCFRRILEADPTNEMAAMYLKDIEAADNMYYDEETARNEARMKQLLDRPVTDFELSV
RSRNCLHAMDIHTLGDLTRVSENDLLAGKNFGQTSLDEIREMLSSFGLHIGQNLHESLGT
DGGYAALPPELADNPATEKPISDLGLSVRSRKCMSRLGIGTIGELLRRSPDELLASRNFG
VTSLNEIREKLTEMNLKLRND
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtcgacgaattaattgacgtaaaaagtgtgttgcaaagctctgaaggtgtaggc
tactcggacatagagcgattgtcacaaattgtctgctctgaccaggtttcagagttgaac
aacgaagtgcaggcgctgatccgaagtatttcagaaggccaggcttcagccggactgagt
gcccgtgccgggatcgccctgcatctgctgggaaaacacaaagaagcagtcacacaactg
gaaaaagtgcaagacaacgcgacggcctgtttttatcaggccgtttcactgattgctctg
aagcgatatgctgaagcagaccagaagctggaagcggctgccaaactgggttatgactcc
attgaatgttctctgcgaagagcagaaactctgcgtctggttgggaaactggatgatgct
gaatcggtattgggaacgatttcgaaggatgctgccgggcgtgctgaatattctttccag
atgggatgcattcgctcagaccgcggtgacctttacggcgcgatcgaatacttcgaacgt
gccgtggatatggatcctcgccattcacgagcgattttccgcctggctggtgaaaacgct
tctcgtggaaacgacgaagatgcaattcgcctgtatgagcagtcactctccagtccgccg
ttctacctgggagcaatcctgaatctgggactgttgtacgaggatatggaaaactatcct
gctgcagctttctgtttccgccgcattctggaagcagatcccacaaacgaaatggcagcg
atgtacctcaaggacatcgaagctgctgacaacatgtattacgatgaagagacggcccgc
aacgaagcccgcatgaagcagttgctggatcgtcctgtcaccgacttcgaactttcggtc
cgcagccgcaactgtctgcatgcgatggatattcataccctgggtgatctgacacgcgtc
agcgaaaatgacctgctggctggtaagaacttcggtcagacatctctcgatgaaatccgc
gaaatgctttcgtcatttggcctgcatatcggtcagaacctgcatgagtctttgggaacc
gatggcggctacgctgctctgcctcccgaactggcagacaaccctgccacagagaaacca
atttccgatctgggactttctgtgcgttcaagaaaatgcatgtcccgtctgggtatcgga
actattggcgaactgttgcgtcgcagccccgatgagttactggccagccgtaacttcggc
gtgacctcactcaacgaaattcgggaaaaactgactgagatgaacctcaaactgcgaaac
gattag
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