Gimesia maris: GmarT_55140
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Entry
GmarT_55140 CDS
T06180
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gmr
Gimesia maris
Brite
KEGG Orthology (KO) [BR:
gmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmr03019
]
GmarT_55140 (hrpB)
Enzymes [BR:
gmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GmarT_55140 (hrpB)
Messenger RNA biogenesis [BR:
gmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GmarT_55140 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
ABC_tran
FtsK_SpoIIIE
AAA_25
T2SSE
RsgA_GTPase
AAA_23
TssR_VWA
AAA_30
SLFN-g3_helicase
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QEG19613
LinkDB
All DBs
Position
7161274..7165278
Genome browser
AA seq
1334 aa
AA seq
DB search
MSRGDVNSAAADAGAASVASTAALSELPKLISQAMAGDQFRFSQRLRSIRQAQKSKKPFD
KNLQRLREELEKSLARRDERLKRCPKITFDQSLPIHQELATIQKTIEENQVVIVCGETGS
GKSTQLPKLLLSMGRGISGIIGHTQPRRIAARSVAARISEELGREQGTACGFKIRFTDTT
NPNTYIKLMTDGILLAETQTDSFLNQYDTIIIDEAHERSLNIDFLLGFLKRLLPKRRDLR
VIITSATIDAERFSEHFAGSEGPAPILNVSGRTYPVEIRYRPFDDEPAGKEAGKETGNKS
QNSSRDEQSQLADAVNELAAIDDGDILIFVATEWDIRETAKLLRGRSIIGDDGGRQTEIV
PLYGRLSTAEQNKVFRPSSYRRIVIATNVAESSITVPGIRYVIDTGLARISRYSSRSQVQ
RLPIEAVSQASANQRAGRCGRVAPGICIRLYSEADYKSRDEFTSPEILRTNLASVILQTL
NMRLGAIEEFPFIDPPKPTAIRDGYSTLFELGAIDEQNRLTDIGRKISRLPVDPRIARMI
LAAHDENCLHEILIIAAALELQDPRERPIEKQQAADEAHEQFRDPDSDFLSFLKLWDFYH
KLKEEQSHSKLRRACVQNFLSYNRLREWADIFRQLRQLVEESGIKPHPRKDDSAAIHRAL
LPGLLSNIAMRSDSHEYTGAGQQKYFLWPGSGIFEKKPKWIISAELIETSKRYARTVAKI
SPNWIEPAAPHLVKKSWSDPRWNGEAASAVAAEKVTLFGLTIVPRRSVHYGKIDPEHSRT
LLLQYGLVEGDININVDFLAHNQKFIEDLEQQQARSRRYDLIPSQEQQFAYYDQRIPEDV
YDGVSLKKWWKVASLKTPTLLNMRLEDFFDTQSEEIDEGEFPDAINMGKMQFPLEYHLEP
GAEEDGVTVSIPQESLNQLSPQRLGWLVPGLLEEKVAAMIKALPKAVRRMLVPAPETAKQ
VVSKLEFGKGSFEETVAEMLSQISGERITADQFEIQRLPQHLQMNIRVLDQGGDAIAVNR
NLTQLRQEYGSKAASSFTALSDDHWSQSGLTDWTFGDFPAEVQIQHDQLSLTGFPSLVDE
QTSVALCLRDAPERAAYETRFGLRRLFILSEHKRLKAQVEHLPDLNRISLYATAIGGINL
REQLVELLAERTLFGKKEQLPRNEAQYRQLVKEWRNQIPVAAQDLASLLPGLFEQYHKMK
VTLDKTKVPAWSEPLHDMRAQLNAMINNRFLVSTPYPWLQQFSRYLQGMEMRLSKLGGTG
LKKDIANIRSISRYFELYSQRARQHHEREIVDPQLIKFRWMLEELRVSLFAQKLGTALKV
SPKILDQQWAAVRD
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcggtgatgtgaattcggctgctgctgacgctggtgctgccagtgtggcttcg
actgctgcgctgtcggaactgccgaaactgatttcacaggcgatggccggcgaccagttt
cgcttctcacaacgactgcgatcgatccggcaggcacagaaaagtaaaaagccgttcgat
aaaaatctgcagcggctgcgggaggaactggagaaatcactggcccgccgcgacgaacgg
ctcaagcgctgccctaaaatcacgtttgaccagagtctgccgatccatcaggaactggcg
accattcagaagacgattgaagagaaccaggtggtcatcgtctgcggagaaaccggctcg
gggaaatcgacgcagctccccaaattactcctgtcgatgggacgcggaatcagcggcatc
atcgggcatactcaaccccgccggatcgccgcccgctcggttgccgcccgtatctcagag
gaactgggccgtgaacagggaaccgcctgtggcttcaagattcgcttcaccgacaccacg
aacccgaacacctacatcaagctgatgactgacggcattctgctggcggaaactcagacc
gacagcttcctcaatcagtacgatacgatcatcatcgacgaagcacacgaacgttcgttg
aacatcgacttcctgctcggctttctcaaacgcctgctccccaaacgcagagacctgcgg
gtgatcatcacctcggcgacgattgatgcggaacgcttcagcgaacattttgccggcagc
gaaggaccggcgccgattctgaatgtctcgggacggacgtatccggtcgagattcgctat
cgtccctttgatgatgaaccggctggtaaagaggcgggcaaagaaacgggcaataaatcg
cagaacagttcccgcgatgaacagtcacaactggcggatgcggtcaacgaactggcggcc
attgatgacggcgacatcctgatttttgtcgcgactgaatgggatattcgtgagacagcc
aaactgttacgcggtcgatcgatcatcggcgatgatggcggacggcagactgagattgtg
cctctctacggacgactgtcgacggcggaacagaacaaggtctttcgtccttcctcgtat
cggcggattgtgattgcaaccaacgtcgcagaatcgtcgatcacagtgcccggcatccgc
tatgtgattgatacggggctggcacgcatcagccgttattcgagtcgctcacaggtgcag
cgtctgccgattgaagcggtctcgcaggcgtccgccaatcagcgagccggtcgctgcggt
cgtgtcgcaccggggatctgtatccgactctacagcgaagccgactataagagccgcgat
gaattcacgtcgcccgaaatcctgcgcaccaacctggcgtcggtcattctgcagacgctg
aacatgaggctgggcgcgattgaagagttcccgtttatcgatccccccaagcccaccgcg
atccgcgatggctacagtacgctgttcgaactgggagcgattgacgaacagaaccggctg
accgacattggccgcaagatcagtcgcctgccggtcgacccgcgtatcgcacgcatgatt
ctggcggcacacgacgaaaactgtctgcacgaaatcctgatcatcgccgcagccctggaa
ctgcaggacccgcgagaacgaccgattgaaaaacagcaggccgccgacgaagcccacgaa
cagtttcgcgaccccgattcggatttcctcagctttctcaaactgtgggacttctaccac
aagttgaaagaggagcagtcacacagcaagctgcgacgcgcgtgtgtgcagaattttctg
tcatacaaccggctgcgggagtgggcagatatctttcgtcaactgcgtcaactggtggaa
gagagcgggatcaaaccacatccgcggaaagacgattcggcggccattcatcgtgcgctc
ttgcccggcctgctgtcgaacatcgccatgcgttcggactcgcacgaatacacgggagca
ggacagcagaagtattttctctggcctggctcgggaatttttgagaagaagcccaagtgg
atcatttccgccgagctgatcgaaaccagtaaacgctacgcgcgaaccgtcgcgaagatt
tcgcccaactggattgagccggcggcgccgcacctggtgaagaagagctggagcgatccc
cgctggaacggcgaagctgcttcagcagtcgctgcggaaaaagtgacgctgtttggattg
accatcgtgccccgtcgctcagtgcattatggcaagatcgatcccgagcattcgcggacc
ctgttattgcagtacggcctcgtcgaaggtgacattaatatcaacgtcgattttctggcg
cacaatcagaaattcatcgaagatctggaacagcagcaggcccgctcgcgtcggtacgat
ttgattccttcgcaggaacagcagttcgcctattatgatcagcgaattcccgaagacgtg
tatgatggtgtgagcctgaagaagtggtggaaagtcgccagccttaaaacgccgacgctg
ctgaatatgcggctggaagattttttcgatacgcagtcggaagagattgacgaaggcgaa
ttcccggacgcgatcaacatgggcaagatgcaattcccgctggaatatcatctggagccg
ggtgccgaagaagacggcgtcaccgtgtcgattccgcaggagagtctgaaccaactttca
ccgcaacgactgggctggctcgtgccgggactgctggaagaaaaagtggccgcgatgatc
aaggcgctgcctaaagcggttcgccgcatgctggtgccagcacctgaaacggcaaagcag
gtcgtcagtaaactggagttcggcaaagggtcgtttgaagagacggtggccgagatgctg
tcgcagatctccggcgagcggattaccgccgaccagttcgagatccagcgtctgcctcaa
catctgcagatgaatatccgcgtgctcgaccaggggggcgacgcgatcgccgtcaatcgg
aatctgactcaactgcgacaggaatatggttcgaaagccgccagcagttttacggctctc
tccgatgatcactggagccagtctggcctgacggactggacgttcggagattttccggca
gaggtgcagattcaacacgatcagctttcgctcaccggctttccgagtttagtcgatgaa
cagacctccgtggcgctctgcctgcgggatgcgcccgaacgggccgcttatgaaacgcgg
tttggtttgcgaaggctgttcattctgtcggaacacaagcggttgaaagcccaggtcgaa
cacttacccgacctgaaccggatctcattgtacgcaaccgcaatcggcgggatcaatttg
cgggaacaactggtcgaactgctggcagaacggaccctgtttggcaagaaagaacaactg
ccaagaaacgaggcccagtatcgtcagctggtgaaagagtggcggaaccagattccggtc
gccgcgcaggatctggcgagtctgctgccgggactgtttgagcagtatcacaagatgaag
gtgacactcgataaaaccaaggtacccgcgtggagcgagccgctgcatgacatgcgggca
caactgaatgcgatgatcaacaaccgcttcctggtcagcacgccttacccctggctgcaa
cagttctcccgttatctgcaaggcatggagatgcggctgagcaagctggggggaaccggc
ctcaagaaagatatcgcgaacattcgcagtatctcacgttacttcgaattgtattcacag
cgggcccggcagcatcacgaacgggagattgtggatccgcagctgatcaaattccgctgg
atgctggaggaactacgcgtgtcgctgttcgcccagaagctggggacggccttgaaggtc
tcgccgaaaattctggatcagcagtgggcggcggtgcgagactga
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