Gemmata massiliana: SOIL9_10240
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Entry
SOIL9_10240 CDS
T06634
Name
(GenBank) transcriptional fis family : Sigma-54 factor interaction domain-containing protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_2667 PE=4 SV=1: GAF_2: Sigma54_activat: HTH_8
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
gms
Gemmata massiliana
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gms03000
]
SOIL9_10240
Transcription factors [BR:
gms03000
]
Prokaryotic type
Helix-turn-helix
Other families
SOIL9_10240
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
AAA_5
AAA
Mg_chelatase
AAA_2
HTH_8
AAA_16
AAA_19
AAA_22
AAA_7
Motif
Other DBs
NCBI-ProteinID:
VTR96831
UniProt:
A0A6P2D696
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Position
1:complement(7156957..7158576)
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AA seq
539 aa
AA seq
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MDSDGTNPLFADPKRLLLDMAREHRLPELLRMVVERAAETPRVALARIWLAQRTADCAKC
LTPTECNGRPTCLQLVASAGRSAVDPRVEWTRLDGAFRRIPLGVRKVGRIAATGEPIEVP
NLSSPEPPEWVARPEWVRAEGIAGFGGQPLVHRGQVLGVLAVFARGAIGTECMSWLRTIA
DHTAAAIATARAFEQIEELRAKLELENEYLREEVTRTGAFGELVGGGPALEAVARQIDLV
APTDSAVLLLGESGTGKELVAREVHRRSKRSARPLVKVNCAAVPRELYESEFFGHAKGAF
TGALRDRAGRFELADSGTLFLDEVGEIPLELQAKLLRVLQEGELERVGEERTRKINVRLI
AATNRDLRAEAEAGRFRQDLYYRLSVFPVELPPLRKRGEDIPLLAEHFLALTARKLGRSK
PRLTLANVQQLQRYHWPGNVRELQHVIERAVITADGSRLTIDLPVGSPGTTSKAAAVPAA
GSEDRVLTDAEVRELEANNIRVALRQTKGKVSGPGGAAELLGVRPTTLASRIKVLGLAE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggattccgacggtaccaatccgctgttcgctgatcccaagcggctgctgctcgacatg
gctcgtgagcaccggttgccggaactactgcggatggtggttgagcgcgccgcggagact
ccgcgtgtggctctcgcgcgaatctggctggcgcagcggaccgcggactgtgcgaagtgt
ctgacgccgaccgagtgcaacgggcgccccacgtgtctccagttggttgccagtgcgggg
cggtcggcggttgatccgcgtgtcgaatggacgcggctcgatggtgcgtttcggcgcatt
ccgctcggcgtgcgcaaagtcggacgaatcgcggcgactggcgaaccgatcgaggtgccg
aatctttcgtcgcccgagccgcccgaatgggtcgcgcggcccgagtgggtgcgtgcggag
ggcatcgcggggttcggcgggcagccgctcgttcaccgcggtcaggtgctcggtgtgctg
gccgtcttcgcacgcggagctatcggcaccgagtgcatgagttggctccggaccatcgcg
gaccacactgctgccgcaattgcgaccgcgcgggcgttcgagcagatcgaggagttacgc
gccaaactggaactggagaacgagtacctgcgcgaagaagtgacgcggaccggcgcgttc
ggcgagttagttgggggcggtcccgcgctcgaagcggttgcgcgccagatcgatttggtc
gcgccaacggattcggccgttcttcttttgggcgagagcggtaccggaaaggaactggtc
gcgcgtgaggttcaccgtcggagcaaacgatcggcccgcccgctcgtcaaagtgaactgc
gccgcggtgccgcgcgaactgtacgagagcgagtttttcggccacgcgaagggggcgttc
acaggagcgctgcgcgaccgggcggggcggttcgagttggccgacagcggaacgctgttc
ctcgacgaggtgggagagattccgctcgaacttcaggcgaaattgctccgcgtgcttcag
gaaggtgaactggagcgcgtgggcgaagagcgcacccgcaagatcaacgtgcggctcatt
gcggccaccaatcgtgatctccgcgccgaagccgaggccgggcggttccggcaagatctg
tactaccggttgagtgtgttcccggtggagcttccgccgctccgtaaacgcggggaagat
attccgctattggccgagcactttctcgcgctgaccgcgcgcaaactcgggcgctcgaaa
ccgcgactcacgctagcgaacgttcagcagcttcagaggtaccactggcccgggaacgtc
cgcgagttacagcacgtcatcgagcgcgcggtcattacggccgacggctctcgtttgacc
atcgatctgcccgtcggttctcccgggaccacgagtaaagcagctgccgtacctgctgcg
ggcagtgaggaccgcgtgctgaccgacgccgaggtgcgagaactggaggcgaacaacatc
cgcgtcgcgctgcgccagacgaagggtaaagtgtccggcccgggcggggcggccgagttg
ctcggggtgaggccgaccacgttggcgtcgcggatcaaagttctgggacttgctgagtga
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