KEGG   Gemmata massiliana: SOIL9_11250
Entry
SOIL9_11250       CDS       T06634                                 
Name
(GenBank) dna-directed rna polymerase subunit beta : DNA-directed RNA polymerase subunit beta' OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpoC PE=3 SV=1: RNA_pol_Rpb1_1: RNA_pol_Rpb1_2: RNA_pol_Rpb1_3: RNA_pol_Rpb1_4: RNA_pol_Rpb1_5
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gms  Gemmata massiliana
Pathway
gms03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SOIL9_11250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gms03021]
    SOIL9_11250
   03400 DNA repair and recombination proteins [BR:gms03400]
    SOIL9_11250
Enzymes [BR:gms01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SOIL9_11250
Transcription machinery [BR:gms03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SOIL9_11250
DNA repair and recombination proteins [BR:gms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SOIL9_11250
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: VTR96629
UniProt: A0A6P2D655
LinkDB
Position
1:complement(7026729..7031129)
AA seq 1466 aa
MSTAANNNKNADASEGTSYERINDFGAVRISLASPQDIHSWSHGEVKKPETINYRTYRPE
KDGLFCEKIFGPEKDWECSCGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIQLAAHVV
HIWFFKAMPSRLGTLLDMKTTNLEKIIYFQDYVVINPGDTEVTKLKERELLNEEQYKEKR
GEHGDMFEVDMGAEAIKKLLERLDLVKLSVDLRERLDKEVARGEKKSKQREKELVKRLKT
VEALRDSSNKCEWMVLECIPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLV
DLNAPEVIIRNEKRMLQQSVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLL
GKRVDYSARSVIVVGPELKLHQCGLPKKIALELFQPFIIRRLKELNHADTIKSAKKMLER
KDDVVWDILEEVTRSHPVMLNRAPTLHRMGIQAFEPVLIEGNAIRIHPLVCKGFNADFDG
DQMAVHLPLSIEAQVEATVLMMSTNNIFSPANGNPIITPSQDIVMGCYYLTASRGAEDEA
VEAGDGMVFHSPLELFRAHAEHKLGMHAKVRVRMPIEKKVISEVKDEKGNPRAEELPRKP
NGLVRTTVGRVIFNDILHPKMAFYDLPLSSKHLSRIIADCYQVLGRRETISLLDRMKETG
FRQATRSGLSFAASDLRTPDNKEGVLKDKDKEVEKVRKNFDRGIITETERYNKVIDLWME
ARDLITKKMMTDLRDDRRKDQVTGKEVPYLNPIYLMAHSGARGGIEQIRQLAGMRGLMAK
PSGAIIETPIKSNFREGLTVLEYFSSTHGARKGLADTALKTADSGYLTRKLADVAQNVVI
TMHDCGTTKGISKGVMYKGDEIDRSLSDAIRGRVSRNSIPNPTTGSEILAENEMITPGKA
KELEKLGIDKITVRSPMTCEAPLGVCRLCYGMDLATGSIVEDGMAVGIIAAQSIGEPGTQ
LTMRTFHIGGAAQSRGNVGDNEHKTKKGGIVQFERITVVTNDEGKNIALAPRTGEVVIIR
GKDIAERYGVPHGAELLVTEGQEVPATTALVRWDPHSVPLIAEDSGIVRFKDIKEGVTVR
REIDRATGVERLTIMEHKGDLHPQIIVETGKGKDDRVYYIHERANLQVVNGQKVSAGSML
AKTPREVSQTQDITGGLPRVTELFEARRPRNPAVMAEVAGRVRIDPTRKRGKRIIEVIQE
TEDGKSLGSAREHLVPASAHVRVHPSEYVKEGDPLVHGPLVPHDILKIRGEQEVQEYLVR
EVQSVYRSQRVDIDDKHIEIIVAQMLRKVKVTRTGDTGLLPGAVMDKFAFDEVNRRLTEE
CVKVVNAGDTTLVAGRVYSREAFEEERVLIEKDKKKQQPTFTTPEPADREVQLLGITKAA
VQSDSFISAASFQETTKVLTEAALASKVDYLVGLKENVILGHLIPAGTGFKTHQEAEVKI
NAPGGGAPAPMLAPADVPPAPESTGA
NT seq 4401 nt   +upstreamnt  +downstreamnt
atgagcaccgccgcgaacaacaacaagaacgccgacgcttccgagggcacgagctacgag
cggatcaacgacttcggggccgtgcgcatctcgctcgccagcccgcaggacatccactcg
tggtcccacggcgaggtgaagaagcccgaaacgatcaactaccgcacgtaccgcccggaa
aaggacgggctgttctgcgagaagatcttcgggccggaaaaggactgggagtgctcctgc
ggcaagtaccgcgggatgaagtacaagggcatgatctgcgaccggtgcggcgtgaaggtc
acgcactcgcgcgtgcgccgcaagcgcatgggccacatccagctcgccgcgcacgtggtc
cacatctggttcttcaaggccatgccgtcccgcctcgggacgctcctggacatgaagacc
acgaacctggaaaagatcatctacttccaggactacgtcgtcatcaacccgggcgacacc
gaggtcaccaagctcaaggagcgcgagctgctcaacgaggagcagtacaaggagaagcgc
ggcgagcacggcgacatgtttgaagtggacatgggcgccgaggcgatcaagaagctcctc
gagcgcctcgacctcgtgaagctctcggtagacctgcgcgagcgcctcgacaaggaagtg
gcccgcggcgagaagaagtccaagcagcgcgagaaggagctggtcaagcgcctcaagacg
gtcgaggccctgcgcgacagctccaacaagtgcgagtggatggtgctcgagtgcatcccg
gtcatcccgccggacctgcgccccctcgtgctcctcgactcgggcaacttcgcgaccagc
gacctgaacgacctgtaccgccggatcatcaaccggaacaaccggctcaagaagctcgtc
gacctcaacgcccccgaggtcatcatccgcaacgagaagcggatgctccagcagtccgtg
gacgcgctgttcgacaacaaccggtgcaagcgcccggtgctcgggagcagcaaccgcccg
ctgaagtccctcacggacatgattaagggtaagcagggccggttccgcgagaacctgctc
ggcaagcgcgtcgactactccgcgcggtccgtgatcgtcgtcggcccggaactcaagctg
caccagtgcgggctcccgaagaagatcgcgctcgagctgttccagccgttcatcatccgg
cgcctcaaggagctgaaccacgcggacacgatcaagtccgcgaagaagatgctcgagcgc
aaggacgacgtggtgtgggacatcctcgaagaggtgacccggagccacccggtcatgctc
aaccgggcgccgacgctgcaccgcatgggtatccaggcgttcgagccggtgctcatcgaa
gggaacgcgatccgcatccacccgctcgtctgtaagggcttcaacgccgacttcgacggc
gaccagatggccgtccacctgccgctctcgatcgaggcgcaggtcgaggcgaccgtgctg
atgatgtccacgaacaacatcttcagccccgcgaacgggaacccgatcatcacgccgtcc
caggacatcgtgatggggtgctactacctcaccgcgagccgcggggccgaggacgaggcg
gtcgaggccggcgacgggatggtgttccacagcccgctcgaactgttccgcgcacacgcc
gagcacaagctcgggatgcacgcgaaggttcgggtgcgcatgccgatcgagaagaaagtc
atcagcgaggtgaaggacgagaagggcaacccgcgggccgaggagctgccgcgcaagccc
aacggtctcgtgcgcaccaccgtcggccgggtcatcttcaacgacatcctgcacccgaag
atggcgttctacgacctgccgctgtccagcaagcacctgagccgcatcatcgcggactgc
taccaagtgctgggccggcgcgagaccatttcgctgctcgaccggatgaaggagaccggg
ttccgccaggccacgcggagcggcctgtcgttcgccgcgagcgacctgcgcacccccgac
aacaaggaaggcgtgctcaaggacaaggacaaggaagtcgagaaggtccgcaagaacttc
gaccgcgggatcatcaccgagaccgagcgctacaacaaggtgatcgacttgtggatggag
gcccgcgacctcatcaccaagaagatgatgacggacctccgggacgaccggcgcaaggac
caggtgacgggcaaggaggtgccgtacctcaacccgatttacctcatggcccactccggt
gcccgcggcggtatcgagcagatccgccagctcgcgggtatgcgtggcctcatggccaag
ccgagcggggcgatcatcgagacgcccatcaagtcgaacttccgcgagggcctcacggtg
ctggagtacttctccagtacgcacggcgcgcgtaagggcctggccgacaccgcgctcaag
accgccgacagtgggtacctcacacgtaagctggccgacgtcgcccagaacgtcgtcatc
acgatgcacgactgcgggacgacgaagggcatcagcaagggcgtgatgtacaagggcgac
gagatcgaccggtcgctgtcggacgcgatccgcgggcgcgtgagccgcaactcgatcccg
aacccgacgaccgggagcgagatcctcgccgagaacgagatgatcaccccggggaaggcg
aaggagctggagaagctcgggatcgacaagatcaccgtgcgcagccccatgacgtgcgag
gccccgctcggcgtgtgccggctgtgctacggcatggacctcgcgaccggctccatcgtc
gaggacgggatggcggtcgggatcatcgcggcccagtcgatcggcgaaccgggcacgcag
ctcacgatgcgcacgttccacatcggtggggcggcccaatcccgcgggaacgtcggcgac
aacgagcacaagaccaagaagggcgggatcgtccagttcgagcggatcacggtcgtcacc
aacgacgaggggaagaacatcgccctcgccccacgcaccggtgaggtcgtcatcatccgc
ggtaaggacatcgccgaacggtacggcgtgccgcacggggccgagttgcttgtcaccgag
ggtcaagaggtaccggcgaccacggcgctggtgcggtgggatccgcactcggtgccgctc
atcgccgaagactccgggatcgtccggttcaaggacatcaaggagggcgtgacggtgcgc
cgcgagatcgaccgcgccacgggcgtcgagcggctcaccatcatggagcacaagggcgac
ctgcacccgcagatcatcgtcgagaccgggaagggcaaggacgaccgggtgtactacatc
cacgagcgcgcgaaccttcaggtggtcaacggccagaaggtgtcggccgggtccatgctc
gccaagacgccccgcgaggtgtcgcagacgcaggacatcaccggcggtctgccgcgggtc
acggagctgttcgaggcccggcgcccgcgcaaccccgcggtcatggccgaggtcgcgggc
cgggtgcgcatcgacccgacccggaagcgcggtaagcgcatcatcgaggtcatccaggag
accgaggacgggaagtcgctcggctcggcccgcgagcacttggtcccggccagcgcgcac
gtccgggtccacccgagcgagtacgtgaaggaaggcgacccgctcgtccacgggccgctc
gtcccgcacgacatcctgaagatccgcggcgaacaggaggtccaggagtacctggtccgc
gaggtgcagtcggtgtaccggtcccagcgcgtggacatcgacgacaagcacatcgagatc
atcgtcgcgcagatgctccgcaaggtgaaggtgacccgcaccggcgacacggggctcctg
cccggcgcggtgatggacaagttcgcgttcgacgaggtgaaccgccggctcaccgaggag
tgcgtgaaggtggtcaacgcgggcgacacgaccctggtcgccgggcgcgtgtacagccgc
gaggcgttcgaggaagagcgggtgctgatcgagaaggacaagaagaagcagcagccgacc
ttcacgacccccgaaccggccgaccgcgaggtccagttgctcgggatcacgaaggccgcg
gtgcagtcggacagcttcatcagcgccgcgagcttccaggaaacgacgaaggtgctgacc
gaggccgcgctcgccagcaaggtcgactacctcgtcggcctcaaggagaacgtgatcctc
gggcacctgatcccggccgggaccgggttcaagacgcaccaggaggccgaggtcaagatc
aacgccccgggcggcggggcaccggccccgatgctggccccggcggacgtgccgccggcc
ccggaatccacgggcgcgtga

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