Gemmata massiliana: SOIL9_21510
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Entry
SOIL9_21510 CDS
T06634
Name
(GenBank) dna polymerase i : DNA polymerase I OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3785 PE=3 SV=1: 5_3_exonuc_N: 5_3_exonuc: DNA_pol_A_exo1: DNA_pol_A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gms
Gemmata massiliana
Pathway
gms03030
DNA replication
gms03410
Base excision repair
gms03420
Nucleotide excision repair
gms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOIL9_21510
03410 Base excision repair
SOIL9_21510
03420 Nucleotide excision repair
SOIL9_21510
03440 Homologous recombination
SOIL9_21510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gms03032
]
SOIL9_21510
03400 DNA repair and recombination proteins [BR:
gms03400
]
SOIL9_21510
Enzymes [BR:
gms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SOIL9_21510
DNA replication proteins [BR:
gms03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SOIL9_21510
DNA repair and recombination proteins [BR:
gms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SOIL9_21510
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOIL9_21510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
DNA_pol_lambd_f
HHH_5
Motif
Other DBs
NCBI-ProteinID:
VTR95563
UniProt:
A0A6P2D395
LinkDB
All DBs
Position
1:complement(5784055..5787018)
Genome browser
AA seq
987 aa
AA seq
DB search
MSDPVSAGNLYLLDAHGLIFQMFFGVGPMNAPDGRPTNAVFGVTRSLMNLYDRGADYLIA
ALDHAEPTFRETIDSNYKAHRDPPPDDLLLQEPLIQQVMEAMRVPFLIAKGYEADDVMAT
VASAAAARGLNVFLCTSDKDCRQLVTDKVKMLNLRKDYEVLDAAGIIADWGVRPDQVVDF
QSLVGDSVDNIPGVMGVGPKTAAKWLQQYGTLDELIAHADEAPGGPKTRQALKDAIANGN
LAKSKQLVTLDRNVPIPLDWEGWRRRDWDGQKLLELFHEFGFRGFAERVRKTLTNSGAKK
NADALATAGIAPAPAPVEDTSGRGVPGASAQPAKPAKQPKGKAKKAATPGLFDLLMEETG
ESAPPVEATPLVEAAIPTDSWNYAGYETVDSEASFGAFLAELKKQKAFVFDLETTGLDPI
HDPIVGFAFCWEREWAYYLPVRAPQEDTALDPNATLAALKPIFEDPKIEKRNHNIKFDQI
VLAANGVELAGVAGDSMLAHYLLDPGARVHGLDDLTLDVLKHKNIAIAELIGKGKKQTTM
NTVRVARVRDYACEDADAAFQLATIFEPQLAEKGFRELYDTLEVPLIGVLADMERTGIRV
DVPFLKQLGEQMGAELAGLETDIHALAGREFNIASLKELQKILFEELKLPVQKRTGIKNE
PSTDQESLERLAALGHELPKKLIAHRKVTKLKGTYVDVLPVMADKTGRVHTSFNQASAET
GRLSSSDPNLQNIPMRTEQGAQLRKAFIPRDGWTLVTADYSQIELRLLAQFCGDETLKSA
FTEDRDVHTAVAAQIFKVPEADVTKAQRGVAKTVNFGVIYGMSATGLAVRLAIPRKEAEE
FIDAYFARYPKVLEYQQKLLAHAHKTGEVRTLLGRKRILNAAAINPNSRYQGRGQAEREA
INYEIQGSAADLIKRAMLAVQRRLAAQKMQAKMLLTVHDELVFEAPPSEVEPLAKLVREE
MTTAMKLDVPLRVDVAAGSNWLDVEDV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacccggtttccgcgggcaacctgtatttgttggacgcccacggactcatcttc
caaatgttcttcggcgtcgggccgatgaacgcacccgacgggcggcctaccaacgccgtc
ttcggggtcacgcgctcgttgatgaacctctacgaccgcggcgccgactacctcattgct
gcactcgaccacgccgaaccgaccttccgcgagaccatcgactcgaactacaaggcccat
cgcgatccgccgccggacgatctgctccttcaagagccgctcattcagcaggtcatggag
gcgatgcgggtgccgttcctgatcgcgaaggggtacgaggccgacgacgtgatggcgacg
gtcgcgtccgcggccgccgcgcgcgggctgaacgtgttcctctgcacgtcggacaaggat
tgccgacagctcgtcaccgacaaggtgaagatgctgaacctccgcaaggattacgaggtt
ttggatgcagccggcatcattgcggattggggcgttcggccggatcaggtggttgatttc
cagtcgctcgtcggtgactcggtggacaacattccgggtgtgatgggggtggggccgaaa
acggcggcgaaatggcttcaacagtacggcacactcgacgaactcatcgcgcacgcggac
gaagccccgggtggtccgaaaacgcgccaggcgctcaaagacgcgatcgccaatggcaac
ctcgcaaagagcaaacagctcgtcacgctcgaccggaacgtaccgatcccgctcgactgg
gaggggtggcgccgacgggactgggacgggcagaagctcctcgaactgttccacgagttc
gggttccgcgggtttgccgagcgcgtgcgcaagactctgaccaacagcggcgccaagaag
aacgccgacgccctcgcgactgctgggattgcgcccgcaccggcaccggtcgaagacacc
agcggaaggggcgttcccggtgcgtccgcgcagccggccaagcccgcgaaacagcccaaa
ggtaaagcaaagaaggctgccacgcccgggctgtttgatctgttaatggaagagactggt
gagagcgccccaccggtcgaggccacgcccctcgttgaagccgcgatccccactgattcg
tggaattacgcgggttacgagacggtagactccgaagcgagcttcggagcgttcctcgcc
gagttaaagaagcagaaggcgttcgtcttcgatctggaaacgacgggcttggacccgatc
catgacccgatcgtggggttcgcattctgttgggagcgggagtgggcctactacctcccg
gtgcgcgccccgcaagaggacacggccctcgacccgaacgcgacactcgccgccctcaag
ccgatctttgaagacccgaagatcgagaagcggaaccacaacatcaagttcgaccagatc
gttctggccgccaacggcgtcgaactcgcaggggtggcgggcgattccatgctcgcgcac
tacctcctcgaccccggcgcgcgggttcacgggctggacgaccttacgctggacgtactc
aaacacaagaacatcgcgattgccgagctgatcgggaaggggaagaagcaaaccacgatg
aatacggtgcgggtcgcccgcgtccgagattatgcgtgcgaggatgccgacgccgcgttc
caactcgcgaccatatttgaaccgcaactggcagaaaagggcttccgcgagctctacgat
acgctcgaagtgccgctaatcggcgtactggccgatatggagcggacaggtattcgcgtg
gacgtgccctttctcaagcaactcggcgaacagatgggtgccgaacttgcggggttagaa
acggacattcacgcactcgctgggcgcgagttcaacatcgcctccctgaaagagctgcag
aagatcctcttcgaggaactgaagctcccggttcaaaagcgcacgggaatcaagaacgag
ccgagtaccgatcaggaatcactcgaacgactggctgcgctgggacacgaactgcccaaa
aagctgatcgcacaccgcaaggtgacgaaactcaagggtacttacgtcgacgtgctcccg
gtgatggcggacaaaaccgggcgcgttcacacgtcctttaatcaggcgtctgccgagacc
ggccggttgagttcgagcgacccgaatctgcaaaacatcccgatgcggacggagcaaggg
gcgcagctccgtaaggcgttcatcccgcgcgacggctggacgctcgttaccgcggactat
tcgcagatcgagttacggctcctggcccagttctgtggtgacgagacgctaaagtccgcg
ttcacggaggaccgggacgttcacaccgcggtcgcggcgcaaattttcaaagttcccgaa
gcggatgtaacaaaggctcagcgcggggtggcgaaaacggtcaatttcggcgtcatatat
ggcatgagcgcgaccggactggccgtgcggctcgcgatcccgcgaaaggaggcagaagag
ttcatcgatgcctacttcgcccgttacccgaaagtgctggaataccaacaaaagctcctg
gctcacgcgcacaaaaccggcgaagtgcgcacgctgctcgggcgcaaacgcatcctgaac
gcggccgcaattaacccgaattcgcgttatcaggggcgggggcaggcggaacgcgaggcg
atcaactacgaaattcagggttcggccgcggacctgattaagagggccatgctcgcggtg
cagcggcggctcgcggcacaaaaaatgcaagcaaagatgcttctcactgttcacgatgaa
ctcgtatttgaagcgccgccgagcgaggtcgagccattggccaaactcgttcgcgaagaa
atgaccactgctatgaagctggacgtaccgctccgcgtggatgtggccgctggctcgaac
tggctggacgtcgaggacgtgtaa
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integrated database retrieval system
