Gemmata massiliana: SOIL9_23450
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Entry
SOIL9_23450 CDS
T06634
Name
(GenBank) rne rng family : Hypothetical conserved protein OS=uncultured planctomycete GN=HGMM_F07G10C15 PE=4 SV=1: S1: RNase_E_G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gms
Gemmata massiliana
Pathway
gms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOIL9_23450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gms03019
]
SOIL9_23450
03009 Ribosome biogenesis [BR:
gms03009
]
SOIL9_23450
Enzymes [BR:
gms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SOIL9_23450
Messenger RNA biogenesis [BR:
gms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOIL9_23450
Ribosome biogenesis [BR:
gms03009
]
Prokaryotic type
rRNA processing factors
SOIL9_23450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
VTR95369
UniProt:
A0A6P2D2K5
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All DBs
Position
1:complement(5519345..5522296)
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AA seq
983 aa
AA seq
DB search
MKKEMLINVLQPEECRIAIVEDGVLEELYVERASQESYVGNIYKGRIVNIEPSIQAAFVD
FGIGRNGFLHVSDVDPAYYKHLLSKADLAEYEAELDREYGGGNSSGGGRGRDRGGRGGRD
RGAKPPREMTSWLEPAPSAARSDEFIEAPDFASGIDDEDNVPVAEAVSDEGDAGEVAELD
TVEVDAVEVDAVEVEVAEAETVEEDAPVEVLSSDDDDDGFAAGLEDVPAPVTKAPAPQPK
RAESPRVEARRFVVQPPVEDDEFGAGIVDAELPSARAPEILRSVEPVVPEVPAVAEAIDA
IEGGDPVPPVEVTEPEAKKPRTRRSKPKAEDAAEEPSEGKPKSRTRRPKKKEGEGETDGD
GADDKPKYMGGAERRTAAGDDEGEIKPFFDDGGSADFDPDAPNDRFASASRSDDEGAESA
EPVERFSDDVEPAEAAEQEARDFAHEAEEPAEAEVTGRGFNDDFDSGPRRENDRGRGGRG
DRDRSRGGSRGGRDDRGRGGPRGDRDRGPDRGPRGAGGFKGGPGGPKGGRDRGLPKPPIQ
EIFKRGQEVIVQVIKEAVGTKGPTLSTYVSIAGRYLVLMPSLNRVGVSRKIEDHDARRRL
REIMTTLAPPKGVGFIVRTAAVDRDAKELQNDLAYLLRLWQVVVKRLKRVAGPVEIYRES
DMITRTIRDIFTSDIDTIWVDEATAYGHASEFLQIVMPKFANRIKHFDHTEPLFHRYAIE
DEIAKIHQKRIEMPLGGSLVIEQTEALVAIDVNSGNFRADNNAEETAFQMNLHAAKEIAR
QLRLRDLGGVIVNDFIDMRSESHRRKVEDAFREALRRDRARTKILRISQFGLIEMTRQRI
RPSLKRSIFSDCPHCRANGFVKTSESLAIEVMRLLHLAAHRAPAVQVVQVGVHVDAANYL
LNKRRKEIAALEERGKLEVQITGQPGVSPDLMSVRCFDHNGNEVRLLPPAPLPKLTAGRV
PPRDDRGRGGRDDRGGRYPRPLD
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaatgctgattaacgtcctccaaccggaggagtgccggatcgccatcgtg
gaggacggggttctcgaagaactctacgtcgaacgggcgagtcaggagagctacgtcggg
aacatttacaagggccgcatcgtcaacatcgaaccgagcatccaggccgcgttcgtggac
ttcggtatcggccgcaacgggttcctgcacgtctccgacgtggaccccgcgtactacaag
cacctgctctcgaaggccgatctcgccgagtacgaggccgaactggaccgcgagtacggt
ggcgggaacagtagcggcgggggccgcggacgcgaccggggcgggcgcgggggccgcgac
cgcggggcgaagccgccgcgcgagatgacgtcgtggttggagcccgcgccaagcgcggcc
cggagcgacgagttcatcgaggcaccagatttcgcttccgggattgacgacgaggacaac
gtaccggtagccgaggccgtttccgatgagggggacgcgggtgaggtcgctgaactggat
accgtcgaagtggacgcagtggaggtagacgcggtcgaggtcgaagtggccgaagccgaa
acagtggaagaagatgcacccgtagaagtgctctcttcagacgacgatgacgacgggttc
gcggccgggttggaagacgtgcctgcacccgtgacaaaagctcccgcgccgcaaccgaag
cgcgcggaatcgccgcgcgtcgaggcccgacggttcgtcgtccaaccgcccgtcgaagac
gacgagttcggtgccgggatcgtggacgcggaacttccctcagcgcgggcgccggaaatt
ctgcgctcggtcgagcctgtggtccccgaagtaccagcggtggccgaggccatcgacgcg
atcgagggtggtgacccggttccgccggtcgaagtcacagaacctgaagcgaagaagccg
cgcacccgccggtcgaaaccgaaggccgaagacgcggccgaggagccgagcgagggcaag
ccgaagtcgcgcacccgccgcccgaagaaaaaagagggcgagggcgagaccgacggtgac
ggggcggacgacaagcccaagtacatgggcggcgcggagcgccggaccgcggccggcgat
gacgagggggagatcaagccgttcttcgacgacggcgggtcggccgacttcgacccggac
gcgcccaacgaccgcttcgctagtgcgtcccggtccgatgacgagggcgctgaaagcgcg
gagccggtcgagcgtttcagcgacgacgtggagccggcggaagccgccgaacaagaggct
cgcgacttcgcgcacgaggccgaagagccggcggaagcggaagttaccgggcgcgggttc
aacgacgatttcgactccggtccgcgccgcgaaaacgatcgcgggcgcggcgggcgcggt
gatcgggaccgctcgcgcgggggttcgcgcggcgggcgcgacgatcgcgggcggggcggt
ccgcgcggcgatcgggaccgcggaccggatcgcggcccgcgcggcgcgggcgggttcaag
ggcggcccgggtgggccgaagggcgggcgcgatcgcggtctgccgaagccgccgatccag
gaaatcttcaagcgcggccaggaagtcatcgttcaggtcatcaaggaagcggtcggcacg
aaggggccgacgctgagcacctacgtcagcatcgccgggcgctacctcgtgctgatgccg
agcctgaaccgcgtcggcgtgtcgcgcaagatcgaggaccacgacgcgcggcgccggctc
cgtgagatcatgaccacgctcgcgccgcccaagggcgtcgggttcatcgtccgcaccgcg
gccgtcgaccgcgacgcgaaggaactccagaacgacctcgcgtacctgctgcggctgtgg
caggtggtggtgaagcgcctcaagcgcgtcgcggggccggtcgagatctaccgtgaatcg
gacatgattacgcggaccatacgcgacatatttaccagtgacatcgacacgatctgggtc
gacgaggcgaccgcatacgggcacgcgagcgagttcctacagatcgtgatgcccaagttc
gcgaaccgcatcaagcacttcgaccacacggagccgctgttccaccggtacgcgatcgag
gacgagatcgcgaagatccaccagaagcggatcgagatgccgctcggcgggtcgctggtc
atcgagcaaacggaggcgctcgtcgcgatcgacgtgaacagcgggaacttccgcgcggac
aacaacgccgaggagaccgcgttccagatgaacctgcacgcggcgaaggagatcgcgcgg
caactgcgcctgcgcgacctcggtggcgtgatcgtgaacgacttcatcgacatgcggagc
gagtcgcaccggcgcaaggtggaagacgccttccgcgaagcgctccggcgggaccgcgct
agaaccaagatcctgcgcatctcgcagttcggcctcatcgagatgacccggcagcgcatc
cggccgagcctgaagcggagcatcttctcggactgcccgcactgtcgcgcgaacgggttc
gtgaagacgagcgagagcctcgcgatcgaggtgatgcgcctgctacacctcgccgcgcac
cgcgccccggcggtccaggtggtgcaggtcggcgtccacgtcgacgccgcgaactacttg
ctgaacaaacgccgcaaggagatcgcggctctagaagagcgcgggaaactcgaagtgcag
atcaccgggcaacccggggtgtctccggacctgatgtcggtaaggtgcttcgaccacaac
gggaacgaagtgcggctcctgccgcccgcgccgctgccgaagttgaccgccggtcgcgtc
ccgccacgcgatgaccgcgggcgcgggggacgtgatgaccgtggcgggcgctacccgcgc
ccgctggattga
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