Gemmata massiliana: SOIL9_28250
Help
Entry
SOIL9_28250 CDS
T06634
Name
(GenBank) rna sigma 54 : RNA polymerase sigma-54 factor OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1313 PE=4 SV=1: Sigma54_AID: Sigma54_CBD: Sigma54_DBD
KO
K03092
RNA polymerase sigma-54 factor
Organism
gms
Gemmata massiliana
Pathway
gms02020
Two-component system
gms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SOIL9_28250
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SOIL9_28250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gms03021
]
SOIL9_28250
Transcription machinery [BR:
gms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SOIL9_28250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_43
LacI
Motif
Other DBs
NCBI-ProteinID:
VTR94889
UniProt:
A0A6P2D179
LinkDB
All DBs
Position
1:4954154..4955761
Genome browser
AA seq
535 aa
AA seq
DB search
MSGLGMRMDIRVRQDLRQVLAPRMIQSMEILQLSITDLQTKIDEALQENPFLELKEKLGE
VDEVAPDFNPDAPLKHDETGDLEFNRLEELNRDWDDHFNEEHRGSRASMEEEGDRKLEAM
ANMPDRAPSLQDYLADQIGELELEEDERRLARHICSFVDRTGYLGARLKVRKGKDREELD
EEDKDKPKKKKADDENDEELYSDVFRTVPLSEIASLYDATVTAEDVEDTLVHVVQKLDPP
GVAARDLKECLLLQVPPDAPMAEAMRVIIRDHLEDVGANRIPVIQKATRYELATIQDTIA
AIQHLDPKPGLKFSDSGTRYVMPDVVVERADDSDYTVRLTDEWVPRIRVSKRIVDLCKRQ
DLDESVKEELRKKLQSADWLVKAVEQRRNTLLKVTKAIIDHQRAFLDYGPEHIHPLKMQQ
IADQVKVHVTTVSRAVDDKWVQTPRGVFPLKRFFGGGKANNQTGEDVAYEVMKQKLLELV
SNEDKANPLSDEELVTLLKADGYPVARRTVTKYRKMLNIPSSRQRKDWSLSPTTT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtctcggaatgagaatggacatccgcgttcgccaagacctgcgccaggtcttg
gctccgcgcatgatccagtccatggaaatactccagttgtccatcacggacctccaaacg
aagatcgacgaggctctccaagagaacccgttcctcgagctgaaggaaaagctcggcgag
gtggacgaggtggccccggacttcaacccggacgcgccgctcaagcacgacgagacgggc
gacctggagttcaaccggcttgaggaactcaaccgcgactgggacgatcacttcaacgag
gagcaccgcggtagccgcgcctcgatggaagaggagggggaccggaagctcgaagcgatg
gcgaacatgcccgatcgcgccccgtcgctccaggactacctcgcggaccagatcggcgaa
ctggaactcgaagaggacgaacggcgcctcgcgcggcacatttgcagcttcgtggaccgc
accgggtacctcggcgcgcggctcaaggtccgcaagggcaaggaccgcgaggaactggac
gaagaagacaaggacaagcccaagaagaagaaggccgacgacgagaacgacgaggaactg
tacagcgacgtcttccgcacggtgccgctgagcgagatcgcgtcgctctacgacgcgacc
gtgaccgccgaagacgttgaagacacgctcgtccacgtcgtacagaagctcgacccgccc
ggcgtcgccgctcgtgatctcaaagagtgcctgttactccaggtaccgcccgatgcgccg
atggccgaggcgatgcgggtcatcatccgcgaccacctcgaagacgtcggggcgaaccgc
atcccggtgatccagaaggccacgcggtacgaacttgccacgatccaggacacgatcgca
gcgatccagcacctggacccgaagccggggttgaagttctccgactccggcacgcggtac
gtgatgcccgacgtggtggtggagcgcgccgacgacagcgactacacggtgcgcctcacc
gacgaatgggtaccgcgcatccgcgtgagcaagcgcatcgtggacctgtgcaagcgccag
gatctggacgagagcgtgaaggaagaactgcgcaagaagctccagtcggccgactggctc
gtgaaggccgtggaacagcgccgcaacacgctgctgaaggtgacgaaggccattattgac
caccagcgggcgttcctcgactacggccccgagcacattcacccgctgaagatgcagcag
atcgccgaccaggtgaaggtccacgtcacgaccgtgagccgggccgtggacgacaagtgg
gtgcagaccccgcgcggcgtgttcccgttgaagcggttcttcggcggcgggaaggccaac
aaccagaccggcgaggacgtggcctacgaggtgatgaagcagaagctcctcgaactcgtt
tccaacgaggacaaggcgaacccactgtccgacgaggaactcgtcacgctgctgaaggcc
gacgggtacccggtggcccgccgaaccgtgaccaagtaccgcaagatgctcaacatcccg
agcagccgccagcgcaaggactggtcgctctcgccgacgacaacgtga
DBGET
integrated database retrieval system
