Gemmata massiliana: SOIL9_30800
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Entry
SOIL9_30800 CDS
T06634
Name
(GenBank) heavy metal transporter : DEAD/DEAH box helicase domain protein OS=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) GN=Amir_2267 PE=3 SV=1: DEAD: Helicase_C: DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gms
Gemmata massiliana
Pathway
gms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOIL9_30800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gms03019
]
SOIL9_30800
03009 Ribosome biogenesis [BR:
gms03009
]
SOIL9_30800
Enzymes [BR:
gms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOIL9_30800
Messenger RNA biogenesis [BR:
gms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOIL9_30800
Ribosome biogenesis [BR:
gms03009
]
Prokaryotic type
rRNA helicases
SOIL9_30800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
WSD
FLQE3_permease
Motif
Other DBs
NCBI-ProteinID:
VTR94634
UniProt:
A0A6P2D3G0
LinkDB
All DBs
Position
1:4614067..4615755
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AA seq
562 aa
AA seq
DB search
MVETMAETTATMTVSGFANLGLDNRLVDALSGLGYEEPTPIQREAIPPLIEGRDVIGQAA
TGTGKTAAFSLPLIHRLSTLTVRTRPTALILVPTRELAMQVAESVERYGKPLGIRVLAMY
GGTGMDTQFRALHRGVDVVVATPGRALDHLRRGSLVLSEIAAVVLDEADEMLDMGFAEDI
EALIAATPTTRQTVLFSATMAPRIRAIAGRHLTNAVEIVIARAPVAAGAAPRVRQTAYLV
PRVHKLAALGRVLDAEAPKAALIFCKTRSEVDQLTEALAARGYRPEALHGGMSQDQRDRV
MRLFRSGQANLLVATDVAARGLDVDHLTHVVNYQLPLGTEAYVHRIGRVGRAGREGVALT
VAEPREQSALRAIERVTGQRVEFARVPTAADLKARRAERTKDAIRATIAEGELDQFRGIV
ESLGSEFDPTAIALAALKLAHRAEIGDTADEPDIPTTVPEQSRTPFRARGQQHQQHQTRS
PGPRLARIFISAGRESGIAPRDLVGAIANESGLPGRDIRGIEITDRFSIVEVPEDAAEHV
IESLNGARLRGRRVSARRDRRE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggtcgagacgatggcagaaacgacggcgacaatgacggtgtcggggttcgcgaacttg
ggtttggacaatcgcctcgttgatgcactatccggtctcggctacgaagagccgaccccc
attcagcgcgaagcgattccgccactgatcgagggccgtgacgtcatcggccaggcggcg
acgggtaccgggaagaccgccgcgttttcgctcccactgatccaccgcctttcgaccctc
actgttcgtacccgccccaccgctctgattctggttcccacgcgcgaactggcgatgcag
gtcgcggaatcggtcgagcgctacggtaagccgctcgggattcgcgttctggcgatgtac
ggtggcaccgggatggacacgcaattccgcgcgctgcaccgcggcgttgacgtggtcgtt
gcgacgccggggcgggcactcgatcacctgcgccgcgggtcgctcgtgctcagcgagatc
gcggccgtggtgctggacgaagccgacgaaatgctcgacatgggtttcgccgaggacatc
gaagccctcatcgcggcgactccgacgacccggcaaacggtgctgttctccgcgacgatg
gccccgcgcatccgggccattgcgggccggcacctgacgaacgcggtcgagatcgtgatc
gcgcgtgccccggtcgcggccggagccgctccgcgtgtgcgccagacggcgtacctcgtt
ccgcgtgtacacaaactggccgcgctcggtcgcgtgctcgacgcggaagcgccgaaggcc
gcgctgatcttctgcaaaacgcggtcggaagtcgaccaactcaccgaagcgctggccgca
cgcgggtaccgccccgaagcgctgcacggcgggatgtcgcaggaccagcgcgaccgcgtg
atgcggttgttccggtcgggtcaggcgaacctgctcgtggcgaccgacgtggccgcacgc
gggttggacgtcgatcacctcacgcacgtcgtcaactaccagttgccgctcgggaccgag
gcttacgttcaccggatcgggcgcgtgggtcgggccgggcgcgagggcgtggctcttacc
gtggccgagccgcgtgagcaatcagcgctgcgggccattgagcgcgtgaccggccagcgt
gtcgagttcgcgcgggtgcccacggcagcggacctgaaggcgcgccgggcggaacgcacg
aaagacgcgatccgtgcgacgatcgcggaaggcgaactcgatcagttccgcggaatcgtc
gagtcattgggcagcgagttcgacccgacggccatcgcgctggccgcgttgaaattggct
caccgcgcggaaatcggcgacaccgcggacgagcccgacatccccaccacggtgccggaa
cagtcgcgcacgccgttccgggcacgcgggcaacagcaccagcagcaccagacgcgctcg
cccggtccgcgcctggctcgcatcttcatcagcgcgggccgcgagtccgggatcgcgccg
cgcgacctggttggcgcgatcgccaacgagtcgggcctcccggggcgcgacatccgcggg
atcgaaatcaccgaccgcttctccatcgtggaagtgcccgaagacgcggccgagcacgtg
atcgaatcgctgaacggcgcccgcttgcggggccgccgggttagcgctcgccgcgaccgc
cgcgaatga
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