Gemmata massiliana: SOIL9_31620
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Entry
SOIL9_31620 CDS
T06634
Name
(GenBank) single-stranded-dna-specific exonuclease : Exonuclease RecJ OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_4350 PE=4 SV=1: DHH: DHHA1
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gms
Gemmata massiliana
Pathway
gms03410
Base excision repair
gms03430
Mismatch repair
gms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SOIL9_31620
03430 Mismatch repair
SOIL9_31620
03440 Homologous recombination
SOIL9_31620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gms03400
]
SOIL9_31620
DNA repair and recombination proteins [BR:
gms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SOIL9_31620
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SOIL9_31620
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SOIL9_31620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
VTR94552
UniProt:
A0A6P2D507
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All DBs
Position
1:4495630..4497408
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AA seq
592 aa
AA seq
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MARAEKQWHLLPSDSTATNRLAGAARVSSVVAQLLINRGVRDAAAARRFLDTPLGGLLPP
MALPGVRDAADRIARAIADKRRICIYGDYDVDGVTGTSVLLRVLNKLGADVQFHVPLRLS
EGYGLNGERLRELQRAGVSMVVSVDCGIASLAEAQVAREIGLELIVTDHHEMKMGLDGPI
LPLASVLVHPRLPAPEPYPFGDLSGAGVAFKLAWAVAQRATGSERVPADLREILLDAVGL
AALGLVADVVPLRDENRIFVRHGLERIRTNPSVGLKALLDASGVKPDQVLTSEDVGFKLA
PRLNAAGRLGCASFAVELLTTTSITKAVQLAQQLEALNSDRQSHERKYTQAAKEMVEEQF
ANDPAIVVGSEDWHPGVIGIVASRLVDYFGKPALVIAMQPNEPIATGSGRSVTGFALHTA
LVACDDILEGHGGHAAAAGLKVRQERIPALRERFNAYVTNHYPGGAPAQQLTLDAEVPLS
AITFGLLKDLDKLEPYGAANPKPKFLAAGLKVEGARLIGTGEVQRHMDFRVRQGETTIRC
VAWGMADRLEELMSANGDCCLAFTPKINEWKGYKKIELQVIDLKPGKTVPLV
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgtgcagaaaagcagtggcacttactgccgtccgactcgaccgcgaccaaccgg
cttgcgggggcggcgcgggtgtcgtcggtcgtggcacaactcctcatcaaccgcggcgtg
cgcgacgcggcggcggcccgccggttcctcgatacaccacttggggggctgctcccgccg
atggcgctgcccggggtgcgcgacgcggcggaccgcatcgcacgcgcgatcgccgacaag
cggcgcatctgcatctacggcgattacgacgtggacggcgtgaccggcacgtccgtgctg
ctccgcgttctcaacaaactcggcgcggacgtgcaattccacgtgcccctgcgtctgtcc
gagggctacgggctgaacggtgagcgactccgcgaactccagcgcgcgggcgtctcgatg
gtggtaagtgtggattgtgggatcgcgagccttgcggaagcgcaggtggcgcgcgaaatc
gggctggaactgatcgtcaccgatcaccacgagatgaaaatggggctggacggcccgatc
ctcccgctggcatcggtgctcgttcacccgcgattgccggcccccgagccatacccgttc
ggcgatctgtccggcgccggggtcgcgttcaagctggcgtgggcggtcgctcagcgcgcc
accgggtcggaacgagtgcccgcggacctgcgcgagattctcctcgacgcggtcgggcta
gcggcccttggtctggtcgcggacgtcgttccgctccgcgacgagaaccggatcttcgtg
cgccacgggttggagcgcatccgcacgaacccctctgtggggcttaaagctctcctcgac
gccagcggtgtgaaaccggaccaggtgctgacgtccgaggacgtcgggttcaaactcgcc
ccccgcttgaacgcggccggacggttaggttgcgcgagttttgccgtggaactgctgacg
actacctcaatcaccaaggccgttcaactggcgcagcagcttgaagcgctgaacagcgac
cgacaatcgcacgagcgcaaatatacccaggcggcgaaggaaatggtcgaggagcagttc
gcgaacgacccggccattgtggtcgggtccgaggactggcacccgggggtgatcgggatc
gtcgcgagtcgactggtggactacttcggcaaaccggcgctggtgatcgcgatgcagccg
aacgagcccatcgccaccggttccgggcggagtgttaccggattcgcactccacacggcg
ctcgtggcgtgcgacgacatactcgaagggcacgggggccacgcggcggcggccggtctc
aaggtgcgccaggagcgcatcccggcgctgcgcgagcgattcaacgcttacgtcacaaat
cactaccccggcggcgcgccggcacagcaactcacgctcgacgccgaagtccccctctcg
gccatcacattcgggctgctgaaagacctcgacaaattggaaccctacggcgccgcgaac
ccgaagccgaagttcctcgcggccggactaaaggtggagggcgcgcgcctcatcgggacg
ggcgaggtccagcgccacatggacttccgcgtgcgccagggcgaaacgacgatccgctgc
gtcgcgtggggtatggctgaccgcttggaagagctgatgagcgcgaacggcgattgctgt
ctggcttttacaccaaaaatcaacgagtggaagggctacaagaagatcgagcttcaggtg
atcgacctgaagcccgggaaaacagtgccactggtgtga
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