Gemmata massiliana: SOIL9_50350
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Entry
SOIL9_50350 CDS
T06634
Name
(GenBank) rna polymerase alpha subunit domain protein : DNA-directed RNA polymerase subunit alpha (Fragment) OS=uncultured planctomycete GN=HGMM_F13D05C26 PE=4 SV=1: TPR_11: TPR_2: RNA_pol_A_CTD: RNA_pol_A_CTD
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gms
Gemmata massiliana
Pathway
gms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOIL9_50350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gms03021
]
SOIL9_50350
03400 DNA repair and recombination proteins [BR:
gms03400
]
SOIL9_50350
Enzymes [BR:
gms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOIL9_50350
Transcription machinery [BR:
gms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOIL9_50350
DNA repair and recombination proteins [BR:
gms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOIL9_50350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_8
TPR_1
TPR_16
TPR_14
TPR_19
TPR_6
TPR_7
TPR_17
TPR_12
TPR_9
TPR_CcmH_CycH
ANAPC3
IMS_HHH_1
Wzy_C_2
Ubiquitin_5
Motif
Other DBs
NCBI-ProteinID:
VTR92679
UniProt:
A0A6P2CUM6
LinkDB
All DBs
Position
1:2345252..2346814
Genome browser
AA seq
520 aa
AA seq
DB search
MPIFGTARYFRRFSRDLPTRGKVRLVSGVAPLLSFVDTRPSAGRDACSAEHGRRSGDQWG
PDVTESLIDLRALLVEREDFEGGMVGRLREGLAQGGPQVRALKDIIDTLTKRLAVAAPPQ
QKKIHLKLGVANYFLGHVRVAVDNLLKAEGPLAAFFLGQAHVTLGQSRQYAEDGADTTDH
YDAAVKAFERAEKSGYAPQSVQLQRAGVLRLQGHLGESKTILAKLKDAAAHNAEYYYQEG
ALAEAEGDIPRAAKYFERAVELEPRHSAALFRLGFLNDQQGNDYEAIGYYERCLKYPPVG
KGVLYNLGVLYEDNDMYDKAADCYRRLAKADPRDERAKLFVKDSEASLSMHYDPEDEQLS
QANRVVLEIPITDFELSVRSRNCLKRMNIRTLGDLTRVTESQLLASKNFGETSLEEIKII
MNAKQLRIGQSLDQGQQYEFRYRPQQNLSPEEQATLNKPVSDLNLSVRARKCMNRLNIGT
LGELVQRTADELLEAKNFGQTSLTEVRERLGQFNLKLRGD
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcttcggcacggcacgttattttcgccggttctcgcgcgatctgccgacgcgc
ggcaaggtccggctagtgagtggggtcgcaccgcttctttccttcgtggacactcggccg
agtgccgggcgggacgcttgttccgctgagcacggtcggaggagcggcgatcagtggggg
ccagacgtgacggaatctctcatcgatctgcgggcgcttctcgtcgagcgcgaagacttt
gaaggcgggatggtcgggcggctgcgtgaggggttggcccagggcgggccacaggttcgt
gccctcaaagacatcatcgacacgctcacgaagcggctcgcggtcgcggccccgcctcaa
caaaagaagatccacctcaaactcggtgtcgccaactacttcctcgggcacgtccgcgtc
gcggtggacaacctgctgaaggcggaaggcccgttggccgcgttcttcctcgggcaggcc
cacgtgacgctcggtcagtcgcgccagtacgcggaagacggggccgacacgaccgaccac
tacgacgcggccgtcaaagcctttgaacgggcggaaaagtcgggctacgcgccgcaatcg
gtgcagctccagcgcgccggcgtgctccgattgcaggggcatctcggtgaatcgaagacc
atcctcgccaagctcaaggacgcggccgcccacaacgcggaatactactaccaggaaggc
gcactcgcggaggccgagggcgatattccccgggccgcgaagtacttcgagcgcgccgtt
gaactcgaaccccgtcactcggccgccctcttccgcctgggcttcctgaacgaccagcag
gggaacgactacgaagctatcgggtactacgagcggtgcctgaaatacccgccggtgggg
aagggcgtcctgtacaacctcggcgtgctgtacgaagacaacgatatgtacgacaaggcc
gcggactgctaccgccggctcgcgaaggccgacccgcgcgacgagcgcgccaagttgttc
gtgaaggactccgaagcatcgctctcgatgcactacgatccggaagacgagcaactcagc
caggccaaccgcgtcgtgctcgaaatcccgatcaccgacttcgagctgtcggtccgcagc
cgcaactgcctcaagcggatgaacatccgcacgctcggcgacctcacgcgcgtcaccgag
tcgcaactgctcgcgagcaagaacttcggcgaaacgtcgctcgaagaaatcaagatcatc
atgaacgcgaagcagctgcgcatcgggcagtcgctcgaccaggggcaacagtacgagttc
cgctaccgcccgcagcagaacctcagcccggaagaacaggccacgctcaacaagccggtg
agcgacctgaacctctccgttcgtgcgcgcaagtgcatgaatcgtctaaacatcggcacg
ctcggcgaactcgtccagcgaaccgccgacgaactgctcgaagccaagaacttcggtcag
acctcgctcacggaggtccgcgaacgcctcggtcagttcaatctcaaactccgtggagac
tga
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