Gaopeijia maritima: V3331_11685
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Entry
V3331_11685 CDS
T10606
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gmt Gaopeijia maritima
Pathway
gmt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
V3331_11685 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmt03400
]
V3331_11685 (ligD)
Enzymes [BR:
gmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
V3331_11685 (ligD)
DNA repair and recombination proteins [BR:
gmt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
V3331_11685 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WZE80144
LinkDB
All DBs
Position
2643731..2646325
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AA seq
864 aa
AA seq
DB search
MPSDRLDKYREKRAAGSTPEPFGGTRASSGPRLFVVQMHDARNLHWDLRLEMDGALESWA
VPKGPSPNPADKRLAMHVEPHPLEYADFEGVIPDGQYGAGPSICWDRGVWIEIPSKPGGP
PHGLEHGKLLFELRGYKLKGLWTLVHTPRNGDNHWLLIKERDALVDEGGTDIYPRDSILS
GLTVEELPDPDEKLARLRDEAEEAGARPRPRDGAAPPLMLATAHDEPFTRDGWLFEIKYD
GYRIAAERTGGGATLWSRNGNDLTGTFPEIAQAVRALPYPGLVLDGEVVVHDAQGMPSFS
LLQKRGRLTKRPDVAAAAVQLPATYYAFDLLDFGGLDLRGVPLVDRKRILRELLPTVGPI
RYSEHIEREGEAVFRHAAGLGIEGVVAKKADAPYTRGRSENWLKIRTVRSDEFVVVGWTD
PKGSRSGFGALHLARYTSPPNDDPSAELVYVGSVGTGFDQAALDAIEGALAEAPRDDPPC
GGEIPTGAGHHWVEPRMVAEVRYKELTLAGHLRHPVFVTLRDDKDPTECVVPAGADADAD
PRAAAPEGDAEDLLPEPGPVVGGVERTVALTNQDKVLYPAHDGAEGVTKGEVIAYYEAVA
DWILPYLKDRCLVLTRYPDGIDKSSFYQKNAPDWAPDWIRTETVYSEGSERDLSYFVIDD
VAGLRYVANSAALLLHLWGSRVTDLGHPDWCILDLDPKDAPFTDVVELALALKAICDDIG
LPVFVKTSGSSGLHLMVPLGGRLTHDQCKQLAQLLATVAVKERGDIATIDRVIERRDGKV
YVDFLQNGWGKLLVAPFSTRPVPEAAVSMPLEWREVTPDLGPRDFTVRNAIARLEKLGED
PLRPVLELRPDLLGALERLLGRVG
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgaccgcctcgacaagtatcgcgagaagcgcgccgccggcagcacccccgaa
cccttcggcggcacccgcgcctcgtcggggccgcgtctcttcgtggtgcagatgcacgac
gcccgcaatctgcactgggatctgcggctcgagatggacggcgcgctcgagtcgtgggcg
gtgcccaagggcccctcgcccaacccggccgacaagcggttggccatgcacgtggagccg
cacccgctcgagtacgccgacttcgaaggggtgattcccgacggtcagtacggcgccgga
ccctcgatctgctgggaccgcggggtgtggatcgagatcccgtccaagcccggcggccca
ccccacgggctcgagcacggcaagctcctcttcgagctgcgcggctacaagctcaagggg
ctgtggaccctcgtccacacccctcgcaacggcgacaaccactggctcctgatcaaggag
cgcgacgccctggtcgacgagggcggcaccgacatctacccccgcgactcgatcctctcg
gggctcacggtggaggagctgcccgaccccgacgagaagctcgcccggctccgcgacgag
gcggaggaggcgggcgcccgaccccgcccgcgcgatggagcggcgcccccgctcatgctc
gccaccgcgcacgacgagcccttcacccgcgacggctggctcttcgagatcaagtacgac
ggctaccgcatcgccgccgaacgcaccggcggcggcgccaccctctggtcgcgcaacggc
aacgacctcaccggcacctttcccgagatcgcgcaggcggttcgcgccctgccctacccc
gggctcgtgctcgacggcgaggtggtggtgcacgacgcgcagggcatgccctccttctcg
ctgctgcagaagcgggggcgcctcacgaagcgacccgacgtggcggcggccgcggtccaa
ctgccggccacctactacgccttcgatctgctcgatttcgggggactcgatctgcgtgga
gtccccctcgtcgaccgcaagcggatcctgcgcgagctgctccccaccgtggggccgatc
cgctattccgagcacatcgaacgcgagggcgaggccgtcttccggcacgcggccggactc
ggcatcgagggggtggtggcgaagaaggccgacgcgccctacacccgcggccggtcggag
aactggctcaagatccgcacggtgcgcagcgacgagttcgtggtggtcgggtggaccgat
cccaagggcagccgcagcggcttcggggcgctgcacctggcccgctacacctcgccgccg
aacgacgacccgtcggccgagctcgtgtacgtggggtcggtgggtaccggcttcgaccag
gccgccctcgacgcgatcgaaggcgcgctcgcggaggcaccgcgcgacgacccgccctgt
gggggcgagatccccaccggcgccgggcaccactgggtggagccgcggatggtggccgag
gtgcgctacaaggagctcaccctggccgggcatctgcgtcatccggtgttcgtgacgctc
cgcgatgacaaggaccccaccgagtgcgtcgttcccgccggcgcggatgccgacgccgat
ccgcgcgccgccgcgcccgaaggcgacgccgaggatctgctccccgagccggggccggtc
gtgggcggcgtcgagcgcaccgtggctctcacgaatcaggacaaggtgctctaccccgcg
cacgacggcgccgaaggggtgaccaaaggcgaggtgatcgcctactacgaggcggtcgcc
gactggatcctgccctacctgaaggaccgctgcctggtgctcacccgctatccggacggc
atcgacaagtcgtcgttctaccagaagaacgcgcccgactgggcccccgactggatccgc
accgagacggtctacagcgaggggagtgagcgcgacctgtcgtacttcgtgatcgacgat
gtggcggggctgcgctacgtcgccaactcggccgccctgctcctgcatctgtggggcagt
cgcgtgaccgatctcgggcaccccgactggtgcattctcgatctcgacccgaaagacgca
cccttcaccgacgtcgtcgagctcgccctcgcgctcaaggccatctgcgacgacatcggc
ctgccggtgttcgtgaagacgagcggttcatcgggactccatctcatggtgcccctcggc
gggcggctcacccacgaccagtgcaagcagctcgcccaactgctggccacggtggcggtc
aaggagcgcggcgacatcgccaccatcgaccgggtgatcgagcggcgcgacggcaaggtg
tacgtcgacttcctgcagaacggctggggcaagctgctcgtggcccccttctccacccgt
cccgtgcccgaggccgcggtgagcatgccgctcgagtggcgcgaggtgacccccgatctc
ggcccccgcgacttcaccgtccgcaacgcgatcgcgcgattggagaagctcggggaggat
ccgctgcggccggtgctggagttgcggcccgacctgctgggggcgctggagcggttgctg
gggcgggtggggtga
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