Girardinichthys multiradiatus (darkedged splitfin): 124855212
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Entry
124855212 CDS
T08099
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124855212 (ptbp1a)
03041 Spliceosome [BR:
gmu03041
]
124855212 (ptbp1a)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
124855212 (ptbp1a)
Spliceosome [BR:
gmu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
124855212 (ptbp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
124855212
NCBI-ProteinID:
XP_047200836
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All DBs
Position
19:27612936..27631842
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AA seq
575 aa
AA seq
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MDGRLDATELYPLGSGYVPEIDSVHDISVGTKRGSDELFSSCISNGPYIMNSANGNDSKK
FKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLELNSEEC
AQTMVSYYSSVTPVIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMASMA
IPTDVSSMAGAAAQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALI
QYADAMTAQHSKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQ
QSLDHQAMAAAAFSAPGIISASPFGGAHAFPPTFAIQQAGLTVPGIHSALASLGVGHSGM
AAAAAASRLGLSGLAATGGHNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKKEN
ALVQMSDGTQAQLAMSHLNGQRLHGRAMRVTLSKHTTVQLPREGHEDQGLTKDYSNSPLH
RFKKPGSKNYSNIFPPSATLHLSNIPPSVMEDDLKRLFASSGATVKAFKFFQKDRKMALI
QMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacgccactgagttgtaccctctgggatccggctacgtccctgaa
attgacagtgtccatgacatatcagttggcacaaagaggggatccgacgaactcttttct
tcctgcatatccaacggaccctatatcatgaactcagccaatggcaacgacagcaaaaaa
ttcaaaggtgatgtccgcagccctggtgtcccgtcacgtgttgtccacgtacgcaagctg
cccaacgacatcaatgaagctgaagtaataagcctgggactgccctttgggaaggtcact
aatctgctgatgttgaaagggaaaaatcaggcctttctggagcttaacagtgaagagtgt
gcacagacgatggtgagctactactcctctgtcacccctgtcatcagaaaccaccccatt
tacatgcagtactcgactcataaggagctcaagacggacaactctccaaaccaagtgcgt
gcccaggcagctctgcaggcagttaatgccctgcatggaggtggaatggctagtatggcc
attcccacagatgtaagcagtatggcaggagcagcagcccaaagccctgtgctcagagtc
attgtggaaaaccttttctaccctgtcaccctggatgtcctgcatcagattttttcaaag
ttcggaactgtgctgaagatcatcactttcaccaagaacaaccagttccaggctctaatc
cagtatgctgatgccatgacagctcagcattctaaactgtctctagatggccaaaacatc
tacaatgcttgctgtaccctgagaatcagcttctccaagctcaccagcctcaacgtcaaa
tacaacaatgacaagagcagggactacacccgccctgaccttcctacagcagattcacag
caatcacttgaccaccaagccatggcagccgcagcattttctgcaccaggtataatctca
gcttctccctttggtggagcgcatgccttccccccaacgtttgctatccagcaggctggt
ctaacagttcctggcattcacagtgccttggcgtccctgggtgtgggccacagcggcatg
gcagcagcggccgcagctagccggcttggcttgtcaggtctcgctgccactggaggacac
aacgtgttgctggtcagcaatctgaaccccgagagcgttacgccacactgcctctttatt
cttttcggtgtgtatggcgatgtcatgagagtgaagatcttgtttaataaaaaggagaac
gctttagtccagatgtctgatggcacacaggctcagctagccatgagccacctgaatggc
cagcgtcttcatggcagggccatgcgcgtgacattgtcgaagcatacaacagtccagctt
cccagagaaggccacgaggaccagggtctcaccaaggattacagcaactccccgcttcat
cgcttcaagaagcctggctccaaaaattactccaacatcttcccaccatctgcaaccctc
cacctctccaacataccgccttctgtgatggaggatgatctcaaaagactctttgctagc
tcaggagccacagtgaaggccttcaagttctttcagaaggacagaaagatggccctgatc
cagatgggctcagtcgaggaggcgatcgagtccctcattgagttccacaaccatgatctg
ggggagaaccatcaccttcgagtgtccttctcaaagtccaccatctga
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