KEGG   Girardinichthys multiradiatus (darkedged splitfin): 124856282
Entry
124856282         CDS       T08099                                 
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
gmu  Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124856282 (edc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmu03019]
    124856282 (edc4)
Messenger RNA biogenesis [BR:gmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     124856282 (edc4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     124856282 (edc4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_Prp19 Beta-prop_WDR3_2nd WDR55 Beta-prop_EDC4L DUF6545
Other DBs
NCBI-GeneID: 124856282
NCBI-ProteinID: XP_047202549
LinkDB
Position
2:47739959..47771594
AA seq 1373 aa
MASNSNIDIEGATQHLRDILRLDRPGSSADVQSNNDQRNLSFNGELNGLLGAGLLGSSMA
ESTRPISTDGSIQESQRICLTGDDGSTCIPITSNNVEIVASQDSGINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLA
FAHLDSSLLGCVDEAGNLVVWQLTLTGSKILDQIVVHIQRPEDTPLNSHRRLIWCPFIMD
ESDENQDDISQTLALLHEDRAEVWDLEVLRANNSSWPVDATELKDGLITVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDMPRCLHELRPHGGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSMVLPSLKASLDLSAEYLIL
TDVQRKVLYVMELRQDLGKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLTAEEE
SESMSTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNMGFNTSGFLPHSESQDGFA
GFSDQSSDKDSGSGSQTDLRKIHSFPAPSDFLSNSGSASGPMPKLMTPDAFMTPSTSVPA
SPGSSASSLTIVTAISSNSDSNRAIDDVSQSPSRGDNCSSSLGLSPRASSAVLLPGLENL
QALAPSGPLVLDSPQVPDSPLLPPLASPTRARSPDVISSASTVMSQDMPEIATQTLQLQR
GHGLEALPLPALQTDSMASAACALHLLTSPRAANNNGLLPLELGGVEGSSIGVDSESRLG
NKPSLLENTLSQENPGASGGSSDGSVGHTSWPAAPDITRETRNSLRDNGLGDCSREESSE
RRLSSPYHRRSYLLTQNDSQDVGADQSDPDDEIASLASSSGNCGSRSSHRIPVKDWKSSP
RSSPKLKRKVKKDDCDSSQPRHMDPAQFNADAQDELLMLLRTQHRDLTELWSLVETMPGT
IMAQMQHVLMRHQEQEQRRLDRVLVESQNHQQQLQEQLTQQLSHTLSSALTNRMDKVLRD
ELKKTVPQTISKSLEPVTGQLNSTISAKLAAVEVTLKDNVVKVVKSKNTTDAIGRAAAEA
MQGPIQTAYKDTFQSTVLPVFERGCQSMFQQINDSFKQGTHEYIQQLETHMKNRKQREQD
TRDPMIGQLQQMMDSFQSSTDQLASSISATVRAEVQHQMQMVVGNLQESILSHVQRIVKG
EVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQFLQQGQLNQAFQQAL
SATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATRSELKISYLEDALM
NLDHSDPLTRDHMSLVLAQVRPKLITFLQQDPHSPLTKRARRLLMMLQGLVNH
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggcgtccaactctaacatagacatcgagggggcgacccagcacctccgggacatcttg
aggctcgatcgcccggggagcagcgccgatgtacagtcaaataacgatcagagaaacctc
tcgttcaacggagagctgaacggcttactgggagctggactgctgggaagcagcatggcc
gaatccaccagacccatctccactgacggcagcatccaggagagtcagaggatctgcctg
actggtgacgatgggagcacctgtatccccatcacctcaaacaacgttgagattgtggcg
agccaagattctggcatcaacagcaaggcacggggcagcaacaaggttaaaattcagcct
gtcgctaaatatgactgggagcacaagtattactatggcagactgatcgccgtgtccaac
tccttcctggcgtacgccatcagaggagccaacaaccacgctatgattcgggttctgagt
ttggactttagtgagcgctccttactgaaggggttcaccggggccgtcacggatctggcc
tttgcccacctcgactcctctctgttgggttgtgtggacgaggccggcaacctggtggtc
tggcagctcacactcactggaagcaaaatactggatcagatagtggttcatattcagcgg
ccagaagacactccactgaactcccatagacgcctcatctggtgcccattcatcatggat
gaaagcgacgagaaccaggacgacatcagccagactttggctcttctacatgaagacagg
gctgaggtctgggatctggaagttctgagagccaataacagcagttggcctgttgatgcc
acagaactcaaagatggcctcatcacagtcaaaggtcacacccagagagtcagtgaaggt
gctctgtcacctgatggaaccgtgttagccacagcgagccatgacggatacatcaagttc
tggcagatctacatagaaggcggacaagacatgcccagatgtcttcatgaattacggcct
catggaggacgtccgctctcctgtcttctcttctgtgacaaccacaagcggcaggatcca
gaggttcctttctggaggtttctgataactggagcagaccagaaccaggagttaaagatg
tggtgcacggtctcctggacttgcttgcagaccatcaggttttctccagatccattcaac
tctatggttctgccaagtctcaaggccagtttagatctttctgctgaatacttgatcctc
actgatgtgcagagaaaggtcctttatgtgatggagctgcggcaggatctagggaagggg
aaagccagcttcacggccgtgtcggagttcctgcttacccaccctgtgctcagcttcggg
gtacgagacgtcacccacagccgactgagacacaccgaggtcctcacagcggaagaggag
agcgagagcatgtcgacagagggcactcagggacctgcagagtccaaatctggaatccaa
attaaactctactgcgtccacacaaagagtttgcaagacgtccagatctggtttcagccc
aacatgggtttcaacacgtcaggttttcttccgcactctgagtcccaagatggttttgca
gggttttcagaccagagctccgacaaggactctggaagtggctcacagactgacctgaga
aagatccactcgtttcctgctccttctgacttcctgtctaactcgggatccgctagcggc
ccgatgcccaagctgatgactcctgatgccttcatgacaccaagcacttcggtacctgca
tctcctggtagcagcgccagcagtctgactattgttacagccatcagcagcaactctgat
tcaaacagagctatagacgatgtcagtcagagtcccagcagaggagacaactgcagcagt
agtttgggactcagcccaagagcttcttctgcagtgctgttgcctggactcgagaacctg
caggctctggcacccagcggccctctggttcttgactcccctcaggtcccagattctccc
ctgctgcctcccttagcctccccgaccagggcccgctctccagacgtcatctcctccgcc
tccacggtgatgtcccaggacatgccggagatcgccacgcagaccctgcagcttcagcgg
ggtcacggcttggaagccttgcctcttcctgctcttcagacagacagcatggcctctgct
gcctgtgctttgcacctactgacgtctccacgcgctgccaacaacaacggtttgttgcct
cttgaactcggaggcgtcgaagggtcatcgatcggggtagattcagagtccagactcggt
aataaaccgtctctcctggagaatacactgtcgcaggaaaaccccggagccagcggaggg
tcatcggatggcagtgttggccacacgtcatggccggcagctccagacatcaccagggaa
accaggaacagcctcagggacaatgggctgggagactgctcgagagaggagtccagcgag
cgccgtttgagctccccctaccaccggcgctcctacctcctcacacagaacgacagtcag
gatgttggtgctgaccagagtgatcctgatgatgagattgccagtctggcttcatcttct
gggaactgtggctctcgctcctctcacaggataccagtgaaagactggaagagctccccg
cgaagctcgccgaaactaaagaggaaagtaaagaaagatgactgtgattcttctcagccc
cgccacatggaccctgctcagtttaacgcagatgctcaggatgagctgttgatgctgctg
cgcacccagcatagagatttaaccgaactgtggtcactggtggagaccatgccgggtacc
attatggctcagatgcagcacgtgctgatgaggcaccaggagcaggaacagcgcagactg
gaccgagttctggtagagagtcagaaccaccagcagcagcttcaggaacagctcacccag
cagttgagccacaccctcagttcagcgctgacaaacagaatggacaaggttctacgagac
gagctgaagaaaactgtccctcaaacaatttctaagagtctggaaccagtgacggggcag
ctgaacagcacaatttcagctaaactggccgcagtggaggtcaccttgaaagacaacgtc
gtcaaggtggtcaaatccaagaacaccacagacgccatcggtcgagctgcagccgaggcc
atgcaggggcccatccagactgcgtacaaagacaccttccagagcaccgtgctgcctgtc
tttgaaagaggctgccagtccatgtttcagcaaatcaacgacagcttcaaacagggcaca
catgaatacatccagcagctggagactcacatgaagaacagaaagcagagagaacaggac
acgcgggaccccatgatcggccagctacagcagatgatggacagcttccagagctccacc
gatcagctggccagcagcatctcggcgaccgtccgggccgaggtccagcaccagatgcag
atggtggtgggaaatctgcaggagtctattctcagccatgtgcagcggatcgtcaaaggg
gaggtgagcctggccatgaaggagcagcaggcggtcgtaacctccagcatcatgcaggcg
atgaggtcagcagccggaacgcccgtccccacggcgcacctggactaccagacacagcag
gccaacatcctgcagttcctccagcagggccagctcaatcaggccttccagcaggctctg
tcagcgactgatctgaacctggttctgtatgtttgtgagaccatcgactcgcagcaggtg
tttgggcagaccccgtgccctctgagccagcctgttctgctctcactcatccagcagctt
tcctccaacctcgccacccgctctgagctcaagatcagctacctggaagatgcattgatg
aacttggatcacagtgaccccctgactagagaccacatgtccttggtgctggcccaggtc
cgaccgaagctcatcaccttcctgcagcaggacccccacagcccactcaccaagagggcg
cgccgcctgctgatgatgctgcagggactcgtcaaccactag

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