Girardinichthys multiradiatus (darkedged splitfin): 124856580
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Entry
124856580 CDS
T08099
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124856580 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124856580 (sf3b3)
03041 Spliceosome [BR:
gmu03041
]
124856580 (sf3b3)
03036 Chromosome and associated proteins [BR:
gmu03036
]
124856580 (sf3b3)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124856580 (sf3b3)
Spliceosome [BR:
gmu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124856580 (sf3b3)
Complex B
124856580 (sf3b3)
Complex C
U2 SnRNP specific factors
124856580 (sf3b3)
Chromosome and associated proteins [BR:
gmu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124856580 (sf3b3)
TFTC complex
124856580 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
124856580
NCBI-ProteinID:
XP_047203132
LinkDB
All DBs
Position
2:complement(45103061..45135767)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNQFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDEIGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLVLIETDHNAYTETTKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLVNPIQGSTLDQVQLEQNEAAFSVAVCRFPNTG
DDWYILVGVARDMILNPRSVGGGFIYTYRLTAGGEKLEFVHKTPVEDVPLAIAPFQGRIL
VGVGKLLRIYDLGKKKLLRKCENKHVPNIVTGIYTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacatcaccctgcaacgggccactggcatcacccatgccattcatgga
aacttctcaggaaccaagatgcaggagattgttgtttccagaggaaaaatcctggagtta
ttgcgccctgatgccaacacaggaaaggtgcacaccctcctcacaatggaagtgtttggc
atcgtcagatccctgatggccttcagactcacaggaggaactaaagattacatcgttgtg
ggaagcgacagcggtcgcatcgttatcctggagtatcacccatcgaaaaaccagtttgag
aaggtccaccaggaaacgtttggaaagagcggctgccggcgcatcgttccaggacagttc
ctggctgttgacccaaaaggaagagctgttatgataggagcgatagagaaacagaagctg
gtttacatcctgaacagagacgccgctgcgagactcaccatctcctctcctctggaagct
cataaagccaacacgctcgtttatcacgtggtcggagtcgatgtcggctttgagaatccg
atgtttgcctgcttagagatggactacgaggaagccgacaacgacccaacaggagaagct
gctgcaaacacacaacagactctgactttttatgagctggatctgggcctgaaccacgtg
gtccggaagtacagcgaggctttggaggagcatggaaacttccttatcactgttcctggt
ggttcagacggacccagtggggttctgatctgctctgaaaactacatcacctacaagaac
tttggagatcagcccgacatccgttgtcccatcccccgccgcaggaatgacctggatgac
ccggagcgcggtatgatatttgtctgctcagccactcacaagaccaagtccatgttcttt
ttcctggctcagaccgagcagggagacatctttaaggtcacgctggaaacggatgaagaa
atggtcactgaaatacggctgaagtactttgacacaatccccgtggcaacagcgatgtgt
gtcctgaagaccggcttcctgtttgtggcctcagagtttggaaaccattatctctatcaa
atcgctcacctgggtgatgacgacgaggagccggagttctcctcagcgatgccgttggaa
gagggagacaccttcttctttcagcctcggccacttaaaaacctggtgctggtggatgaa
caagagaacttgtcccccatcatgtcctgtcagatcgccgatttggccaatgaagacaca
cctcagctgtatgtagcctgcggacgaggcccaaagtccaccctcagggtccttcggcac
ggactggaggtttcagagatggctgtgtctgagctgcccggtaaccccaacgccgtgtgg
accgtacggcgacacgtagaagatgagttcgacgcctacatcatcgtgtctttcgtcaac
gctactctggttctgtccatcggggagactgtggaggaagtgacagattctggatttctg
ggaacgacgcccacactttcctgctctctgctaggtgaagacgccctcgtgcaggtttac
ccagacggtatccgtcacatccgtgcagataaacgtgtgaacgagtggaaaacgcccggg
aagaaaacgattgtccgctgcgccgtgaaccagcggcaggttgtcatcgccctgaccgga
ggagagctcgtctactttgagatggacccgtcgggccagttaaacgagtatacggagcga
aaggagatgtctgctgacgtggtttgtatgagtctggccaacgtcccgcctggtgagcaa
cgttcccgcttcctggctgtcgggctggtcgacaacacggtccgaatcatctccctggac
ccctcggactgtctgcagccactgagtatgcaggcccttcctgctcagcctgaaagtctg
tgcatcgtggagatgggaggtgttgagaaacaggatgaaatcggagaaaaaggaaccatc
ggcttcctctacctcaatataggcttgcagaatggtgtgctgctgaggacggttctggac
ccggtaaccggtgacctgtcggacaccagaacacggtacctgggttcccgaccagtcaaa
ctgttcagagtccggatgcagggacaggaggccgtgctggcgatgtccagccgatcgtgg
ctcagctactcgtatcagtctcgcttccatctgactccgctctcctacgaaacgctcgag
tacgcctccggcttcgcttcagagcaatgccctgaaggcatcgtggccatctccaccaac
acacttagaattttggctttggagaaactgggagccgtcttcaaccaggtggcttttcct
ctgcagtacacacccaggaagtttgtgattcacccagaaaccaacaacctggttctgatc
gagaccgaccacaacgcctacaccgagacgaccaaagctcagaggaagcagcagatggct
gaggagatggtggaggcggctggtgaagacgagcgagagttggctgcagagatggccgca
gcgttcctgaacgaaaatctcccagaagccattttcggtgcacctaaagccggagcgggg
cagtgggcctcactggttcgactggttaatcccatccagggttcaactctggatcaggtg
cagctggaacagaatgaagctgcttttagtgtggctgtgtgccgttttcccaacaccgga
gatgattggtacattctggtgggagttgccagagatatgattctcaaccccagatctgtt
ggcggcggcttcatctacacgtatcggctcaccgctggaggggagaaactggagtttgtg
cacaagaccccagtcgaggacgtgccgttggccattgcaccattccagggacgcatcctg
gtcggggtgggaaaactgctgaggatctacgacctgggcaaaaagaagctgctgcgcaag
tgtgagaacaagcacgttcccaacatagtgacaggcatctacaccatcggccagcgcgtc
atcgtgtcggacgttcaggagagcctgttctgggtccggtaccggcgaaacgagaaccag
ctaatcatcttcgctgacgacacgtatccccgctgggtgacgacggcctgtctgctcgat
tacgacaccatggcttcagcagacaagtttggcaacatcagcatcgtgcgtcttcctccc
aacaccagtgatgaggtggatgaagaccccacaggaaacaaggccctgtgggacagaggt
ctcctgaacggagcatcacagaaggctgaggtcataatgaactaccacatcggtgagacg
gtgttatcgctccagaaaaccacgctgatccccggaggttcggaatctctggtgtacacc
acactgtcaggaggcatcggcattctggtcccgttcacttcgcacgaggatcacgacttc
ttccaacacttggagatgcacatgcgctccgagtttcctccgctttgtggcagagatcac
ctcagcttcagatcgtactacttcccagtaaagaatgtgattgatggagatctctgtgag
cagttcaacagcatggatccacacaagcagaaaagtgtagcggaggagttggacagaaca
cccccagaagtctccaagaagctggaggacatccgcacccgttacgctttctaa
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