Girardinichthys multiradiatus (darkedged splitfin): 124858578
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Entry
124858578 CDS
T08099
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124858578
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124858578
09142 Cell motility
04820 Cytoskeleton in muscle cells
124858578
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gmu00535
]
124858578
Proteoglycans [BR:
gmu00535
]
Extracellular matrix (ECM) proteoglycans
Others
124858578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124858578
NCBI-ProteinID:
XP_047206585
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All DBs
Position
22:complement(29557084..29578196)
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AA seq
679 aa
AA seq
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MAGTPGIKGPFLVVILHLVLLCSSQNNQGPPGPPGPPGVPGIDGIAGERGIDGEDGFPGP
DGDAGNPGSSGLAGIAGNDGLSGPVGDPGPDGPTGQKGEPGNPGPRGAAGVGADGPPGPP
GPGGLLGEMGKVGLPGAMGVRGPQGPRGPTGPRGAAGMLGASDLCPDSCPPGTPGHPGLP
GMKGHKGVKGEAGEPGKQGHKGEEGDQGGPGDVGSQGPRGPQGVRGAMGMMGTKGEMGAR
GPDGDPGPQGVAGATGDRGQRGVIGEPGIKGETGVQGPRGITGLPGPKGEAGLPGVDGRE
GIPGLPGAKGNIGKPGVPGEVGLQGLPGFPGTPGPKGLSGPKGDAGKPGFPGTMGSAGKQ
GERGEQGELGPVGPIGEPGAIGEQGPVGPAGKPGTRGLKGDPGFPGVPGPPGLPGVKGER
GERGEAGPKGEQGSQGDEGNPGERGEVGDAGEAGPKGEAGNAGEPGKKGPEGSRGQPGIE
GPPGTPGPRGLQGNRGPRGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GVAGLPGKPGPPGPPGPPGDNGFPGQGGARGLPGLKGPPGPMGNKGPKGEMGDRGSRGPT
VRGPKGQSGLLGLPGEPGKPGYGQDGQDGQRGPPGMPGQPGVPGPPGPAGPNGYCDPSAC
NLQAGAVQQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctgggaccccaggcattaaagggccttttctggtggtgatcctacatcttgttctc
ctttgctcctctcaaaataatcaaggaccccctgggccacctggacccccaggagtacca
ggaattgatggcattgctggggaacgggggatagatggcgaggacggttttcctggccct
gatggggatgcaggtaatcccggttcttcaggattagctggaattgctggaaatgacggt
ttaagtggccctgttggggatcctgggcctgatggtcccacgggacagaaaggtgagcct
ggaaatcctggacctcgtggagctgctggtgttggggctgatggaccgcctggaccacct
gggcctggaggacttctgggggaaatgggaaaagtaggactgcctggggcaatgggtgtg
agagggccacagggaccccgtggaccaacaggacccagaggtgcagctggaatgcttggt
gcctctgatctgtgtccagactcttgtccacctggtacccctgggcatcctggcctacct
ggtatgaagggtcacaaaggtgtgaaaggtgaagcaggtgaacctggaaaacagggacac
aagggtgaggaaggagaccaaggaggtccaggagacgttggatcgcagggtccgagggga
ccccaaggagtacgtggagccatgggaatgatgggcaccaagggagagatgggagctcga
ggtcctgatggagatccaggcccacagggagttgcaggggcaactggggacaggggtcag
agaggagtaattggtgagcctgggattaaaggtgaaacgggtgttcaagggccacggggg
atcacagggcttccaggtcctaaaggggaagctggattacctggtgttgacggccgtgag
ggtattcctgggttgccaggagcaaaggggaacatcggcaagccaggcgttcccggagag
gttggacttcaggggcttcctggtttccctggaacacctggaccaaaaggcttgagtggc
cctaagggagatgccgggaagcctgggtttcctgggaccatgggatctgctggaaaacag
ggtgaaaggggagaacagggagagctgggacctgttggacccatcggtgagcctggagct
attggagagcaaggccctgtaggtccagccggcaagccaggcacaaggggactaaaaggg
gatcctggttttcctggtgtcccaggacctccaggcctgcctggagtgaagggagaaagg
ggtgagcgtggagaagcaggacccaaaggagaacaaggatcacaaggtgatgagggaaat
cctggagagagaggggaagttggtgatgctggcgaagctggaccaaaaggagaggctggt
aatgctggtgaacctggcaaaaagggtccagagggaagtcgaggtcagcccggcatcgag
gggcctcctggcacacctggaccgcgaggcctgcaagggaacaggggtccacgtggggtc
cgagggtctcagggacctgcgggtaaagagccaagtgatcagcacataaagcaagtttgc
atgagagttatgcaagaacagctggctcagttagctgctagtttaaggaggccagagtct
ggagttgcaggtttaccaggaaaacctggtcctcctgggcctcctggacccccgggagac
aatggttttccagggcaaggtggggcaagaggcctccccggactcaaagggccaccaggg
ccaatgggaaataagggtcccaaaggtgaaatgggagatagagggtccagagggcccact
gtgcgaggacccaaaggccagtcaggacttcttgggcttccgggagagccaggaaaacct
ggctatggtcaagatggtcaggacgggcagaggggacctcctggcatgccaggacagcct
ggcgtgcctggtcctcctggtccagctggcccaaatggctattgtgacccgtcagcctgc
aacctccaggcaggagctgtccagcagtctctggatgtaaagggacctgcagggaactaa
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