Girardinichthys multiradiatus (darkedged splitfin): 124858973
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Entry
124858973 CDS
T08099
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124858973 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmu04131
]
124858973 (vps8)
Membrane trafficking [BR:
gmu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124858973 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
WD40_CDC20-Fz
TPR_VPS8_2
Clathrin
TPR_Vps41
zf-RING_Vps41
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_11
ANAPC4_WD40
zf-RING_5
zf-C3HC4
Beta-prop_EML_2
zf-RING_2
Beta-prop_HPS5
WDR55
EIF3I
zf-C3H2C3
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
124858973
NCBI-ProteinID:
XP_047207283
LinkDB
All DBs
Position
22:complement(6764093..6830273)
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AA seq
1433 aa
AA seq
DB search
MSQSPDNRSLLSASSQLNLMEVESIDDKEFDIPQVDTPPTLESILSQMEEEEDPFVLEDT
CILNTDNMDAQSCDTSSLASSDSGDPAHLKRHDQTQKPALFESSLSLLPPVSHNTMTTDR
KRRPLDQNPMVHGSVLRLSLLKGISAQIVAATDKVDAGLPTAITMSGVIAVGTSHGLALV
FGKDTNQALRLCLGSKTTGAEFGAVSALSINHDCSRLLCGFAKGQITMWDLANGKLLRTI
TDAHPPGTAILHVKFTDDPTLAVCNDSGGSVFELTFRRVMGMRSCDSRCLFSGSKGEVCC
IEPLRTPPDFRDHPITCYSLLAMASLTKILVIGLKPTLNVWMTLPYTKSDPTSVPQLAWQ
FVPIQKMVNPVLAFCKGETVHFLLVKKEETGTIHVIKQRQLQLSCDIISLNWINSGTLVL
VDSHEKLHVVDRPSQEVLETLDLEQVQLVYNSRHFKSLATGGNVSQALALVGEKACYQSL
SSYAGQIICLGTKSAHILSLRNWKERLDCLLKQEHFTEALPLAWSFHEGKAKAVVGLHGD
SQRRKAVISDKMVEILLQFTEYALKKCPEQGKLQVMEQHFQDMVPILVDYCLLLQKADLL
FNQLYSRLVENMVAKGVFLESLESYIIANRLGHITTPVMKDLLAHYHDNGMMDSLERCIV
HLDVTSLDIQQVVQVCWSNQLYDAVIYIFNRGMNDYITPMEKLFSVIGPRVREGRSLTGD
DVVMGNKLLVYISCCLAGRAYPIGDIPEDLVVQVKNQVFEFLIRLHSGDSSQKEEVFPFI
HTLLHFDTREFLNVLAMTFDDVQNDKQALEYQQRIVDMLLQVMVENPDFTPSQVGGLFTF
LARQLAKPNNTLFVNRNLFDQVLEFLCCPDDDSRHTERQQVLLELLQVGGMVQFNEERLF
TLAEKAKFYQICEFLYEKKLLYDLIVDCYLQDPLRKSEVFSYIHNLMSMPGYSSEEKLKV
KHKVLQHMQELVSLDPGKLADLVVWHFKDEVQSIISELQNDQLLFQFLSCLLEPQEGSQS
APRLPLESELYELLLELMCRFEPQELLKFLHTSQHYRLEEAIQITEKYHCNDANAYLLEK
KGDIHGAFAGLLQTLKERLHVLAAEMSCEFGGGADRRDEEEVDGDLTLMTVKSSLNQMIL
FCHRNCQNLDQEQRKDLWFPLLDTMMASQKEVMGLSDKHISDGLKEMTLKVMNCMSSFIS
LPAIIQQILQDPVYGRGKLAEIQGLILGMLDTFTYEQTLLETTTSLLNHDLHWSLAHLRS
AVTRGLHPRQDCCNICLQHYKRKQDASEEIIVFSCGHLYHLQCLQQKDCGWGQTSELQPW
RCYKCSSSHRGRASAEPNRSRSASLAQTCFSSGHHEKGAETHRKKVFAVATMDLQQELSW
DHLRGLYRGPSRLSILSEVSHGQGSEKTSFLIPAQPGTEHFPLKLAPPPLFED
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtctccagacaacaggagccttttatccgcttcttcccagctcaacctcatg
gaagtagaatcgattgacgataaggagtttgacattccccaagtggacacacctcccaca
ctggagagcatccttagtcagatggaggaagaggaggacccttttgttctggaggatact
tgcatattaaacacggacaacatggatgcgcagtcctgcgacacgtcctccttggccagc
tctgacagcggagaccctgctcacctcaaacggcatgaccaaacacagaaacctgccttg
tttgaaagctctctaagcctgcttccaccagtcagccataacactatgaccactgacaga
aagaggaggccactggatcagaacccaatggttcatggctcagttcttcgactcagcctg
ctgaagggcatttctgcacagattgttgctgctaccgacaaagtggatgctgggttgccc
actgcaataacgatgtctggtgttattgctgtaggaacgtctcatggtctggccctggtg
tttggaaaagataccaaccaggctctgcggctctgtctgggtagtaagacaacaggagca
gaatttggcgccgtctctgctcttagcattaatcatgactgctcacgtcttctctgtgga
tttgcaaagggtcagataacaatgtgggatctcgccaacggaaagcttctgaggaccatc
actgatgcccatcctccagggacagccatactgcatgtgaagttcacagatgacccaact
ctggcggtatgcaatgacagtggaggatctgtatttgaactgacattcaggagggtaatg
gggatgcgctcatgtgactcacggtgtctcttcagcggttccaaaggagaggtgtgctgt
atagaacctttgcggactcctccagatttcagagatcaccccatcacatgctactctctc
ctagctatggcttccctgaccaagattctggtcattggactgaagcccacactgaatgtc
tggatgactcttccctacaccaagtctgatccaacaagtgtgccccagctggcctggcag
tttgttcctatccagaagatggttaatcccgtccttgccttttgtaaaggagaaacagtc
cacttccttctggtgaagaaggaagagacaggcaccatccatgtgatcaaacaaagacaa
ctccaactcagctgtgacatcatcagcctgaattggattaacagtggcactcttgtgctg
gtggacagccatgagaagctgcacgtcgtagaccggccctctcaagaggttttggagacc
ctggatttggagcaggtgcagttggtgtacaacagtcgacacttcaaatcgctggctact
ggagggaacgtctcccaggctctggcgctggttggggaaaaagcctgttaccagtcacta
tcaagctatgcaggacagataatctgtttgggcactaagtcagctcacattttgtccctg
agaaactggaaagagcgcctggactgtttattgaagcaggagcatttcactgaggctctg
cctttggcctggtccttccatgagggcaaggccaaggctgtggttggccttcatggagat
tcccagagaaggaaagcagttatcagtgacaagatggtagagattctcctccagtttaca
gagtatgctctgaagaaatgtccagaacagggcaaactccaggttatggagcagcatttc
caggatatggtgccaatcctggtggattattgcctcctgctgcagaaggctgacttgctg
tttaaccagttgtactcacggctagtggagaacatggttgctaagggtgtcttcctggag
tcactggagtcttatattattgccaatcggcttggtcacatcaccacgcctgttatgaag
gacctcctagcacattaccatgataatggcatgatggacagcctggagagatgcattgtc
catctggatgttaccagccttgacatacaacaggtggtccaagtgtgttggagcaaccag
ctctatgatgcagtgatctatattttcaaccgaggcatgaacgactacattactccaatg
gagaaactcttttcagtgattggtcctagagtcagagaggggagaagcctaacaggtgat
gatgtggtgatggggaacaaattacttgtttacataagctgctgtcttgctggaagagca
tatccgatcggagacatccctgaagatctggtagttcaggtcaagaaccaggtgtttgag
ttcctcatccgtctccattcaggcgactcatcacagaaggaggaggttttcccatttatt
catacgctcctccactttgatacccgggaatttctcaatgtacttgccatgacatttgat
gatgtccagaatgacaagcaggctctggagtaccagcagaggatagtggacatgttactt
caggtaatggtggaaaaccctgacttcactccctcccaggttggtggtctcttcaccttc
ctggctcgccagctggccaagccaaacaacacgctttttgtgaacaggaacctttttgat
caggtgctggagttcctgtgttgcccagatgatgactctcgacatactgaaaggcagcag
gttctactagagctgctgcaggttgggggcatggtccagtttaatgaagaaaggctcttc
acactggcagaaaaagcaaagttctaccagatctgtgaattcctttatgagaagaaactt
ctgtacgacctgattgtggactgctatctgcaagatccacttcgaaagtcggaagtcttc
agctacatccacaatctgatgtccatgccgggctacagctctgaagagaaactaaaagtc
aagcacaaagtgctgcagcacatgcaggagctggtgagcctggaccctggtaaattagct
gaccttgtggtgtggcacttcaaagatgaggtgcagtcaatcatctctgaactgcagaat
gaccaactactgttccagtttctcagctgcctcctggagcctcaggaaggatctcagtca
gcgccccgtctgcctctggagtctgagctttatgagcttctgctggagctgatgtgccgt
tttgaaccccaagagcttctaaagttcctccacacctctcagcattacagacttgaggag
gccatacagataacagagaagtaccactgtaatgacgccaatgcctatctgctggagaag
aagggagatattcatggagcatttgctggcttgcttcagaccctgaaggaaagactgcat
gtccttgctgcagagatgagctgtgaatttggaggaggagctgacagacgtgatgaagaa
gaggtggatggtgatttaacactgatgactgtgaagagttcactaaaccaaatgattctc
ttctgtcatcgaaactgtcagaaccttgatcaagaacaaagaaaggatctgtggtttcca
ctcctggacaccatgatggcctctcagaaagaggtgatggggctcagtgataaacacatc
tcggatgggctgaaggagatgaccctgaaggttatgaactgtatgagcagctttatttct
cttcctgccatcatccagcaaatactgcaggacccagtttatggaagagggaagctggca
gagattcagggactcattctgggaatgctggacacgtttacctatgaacagactttgctt
gaaacaacaacaagtctgctgaaccatgacctccactggtctttggctcatctccgctct
gctgtcaccagagggcttcatccacgacaagactgctgcaacatctgtctgcagcactac
aagaggaagcaggatgcatcagaggagatcattgtgtttagctgtggccacctataccac
ttgcagtgcctgcaacagaaagactgtgggtggggccagacctcggagctgcagccttgg
aggtgctacaagtgttcttctagccatagaggaagggcttccgctgagccaaacagaagc
cgcagcgcatctcttgctcagacctgtttttcatcaggacatcatgagaaaggagcagag
actcacaggaagaaggtgtttgctgtggcaacaatggatctgcagcaggaactgtcctgg
gatcacttacgaggtttatacaggggaccatcgaggctctccatcctttctgaggtttcc
cacggccaaggcagcgagaaaacaagcttcctaattccagcccaaccagggacagaacat
ttcccccttaaactcgctcctcctcctctgtttgaagattag
DBGET
integrated database retrieval system
