Girardinichthys multiradiatus (darkedged splitfin): 124860206
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Entry
124860206 CDS
T08099
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124860206 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmu01009
]
124860206 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmu04515
]
124860206 (pcdh11)
Protein phosphatases and associated proteins [BR:
gmu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124860206 (pcdh11)
Cell adhesion molecules [BR:
gmu04515
]
Cadherins
Protocadherins
124860206 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DDE_3
DUF6249
Motif
Other DBs
NCBI-GeneID:
124860206
NCBI-ProteinID:
XP_047209215
LinkDB
All DBs
Position
23:complement(28728311..28936866)
Genome browser
AA seq
1293 aa
AA seq
DB search
MNLASQVHVLVALLTCLVLLCKAQERDYIVKEEQPENVRIGNLRKDLDLNLDPTIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFTEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVNEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFRDSELEVSVPENTPMGTSVAQLHATDADLGFNAQVHFSFSNQISSSTKRHF
AINSSSGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
ASTQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQDRYSFTV
IAKDNGSSPLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAIITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGSVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFSIDKTTGNITLQEKIVLADQGLHRLVVKVKDLGQPESLHAISLVHLFVN
DTVSNSTFIQEQLQKSMETPLDRNIGDNEITPQANGYLIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPEDS
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQIATRQNPGQ
TPEKSFNSPPPICPHKSPDLNPVEHLWDVVEREICIRDLQPTNLEQLCDEACQLGKITSM
NTQRRVTFHLPDGSQESCSDSGLGDLDPSSTASAMQPLPLSFPQDEYYEQTSPNSRTEGD
GNSDPESTIEVNLKKALAEASETCTQECLILGHSDSCWMPPTLAQFQSPGSNSPTPTTTT
ITAAFPSFGFQGVKANIGGMGVMDGRHTLGRSVPKRDELDKGFHRPQFYNTLDRHCSSKK
EDPVKVIPLASFSSPGQHTPTGGSSSFLHEHQL
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggcaagtcaggtacatgttctggtggccttgctcacctgtttggtcttatta
tgcaaggcccaggagagggactacatcgtgaaggaggaacagccggagaacgttcgcatt
gggaatctgcgcaaggacctcgaccttaacctggaccccaccatcaggctgtcctctccg
ctgcagttcaagcctgtgtataagacgggcgatgtgcctttggtgcgggtggaggcaaac
acgggggagatttttaccaccaatcacaggattgaccgggagaagctgtgctcgggggtc
ttcacggagaaacggtgctactatgagattgaggtggcagtgctgcccgacgagatcttt
cgattggttaagatccggttcctgatcgaggatgtgaatgacaatgcaccccttttccag
tccacggtaataaacatttccatccctgagaacacagccatcaacacccgatacccggtg
ccatcagcatttgaccctgatgtgggaatcaacgggatccaacactacgagctggtcaag
agtgtcaatgagtttggcttagacatcattgagacccctgaaggtgacaagtggccacag
cttattgttcagcagaaccttgatcgggagcaaaaggacacctttgtgatgaagatcaag
gtggaggatggtggcaacccccctaaatctagcactgccattctccaagttaccatttct
gatgtcaacgacaatcgtcctatcttcagggacagcgagttggaagtctcagttccagag
aacactccgatggggacttcggtggctcagcttcacgccacagatgcagacctaggtttc
aatgcccaggtccacttttcattcagcaaccaaatctcctcctctaccaagcgccacttt
gccatcaatagctcctctggactgattactgtaaagcaacctctagaccgggaggttact
cctgttcataaactcattgttcttgcgagtgatggcagctcaaccccatcaagagccaca
gtgactgtcaatgtcacagatgttaatgacaatgttccttccatagacactcgctacatt
atcaacctggtaaatgggactgtcctactgtctgagaatgctcctctcaacaccaaaata
gcccttattactgttactgacaaggatgcagatctgtatggcaaagtggcttgctacact
gaccatgatgttcctttccggctaaagcctgtctttaatgatcagttcttactggagaca
gctgcccctctagattatgagaccactcgtgaatatgctattaagatagtggcctcagac
agaggaacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaat
gacaacgcacccatctttccccaacctgaaattcaactttcaataccagagaacaatgat
gcctcaactcagttaataaaaatcagtgccactgatgcagatagtggacataatgctgag
attatttatactcttggccctgatgcaccggatgggtttaacatagacaggcggtcaggg
attctctctgttgggaagcgattggacagagaaaagcaagacaggtactcattcaccgtc
atagcaaaagacaatggctcatcccccttgcagagtaatgtcactgttaggctaattgtc
caggacctcaatgacaacagcccagctttcactcaccctgagtataacttctatgtgcct
gagaacctgcctctctatgggacagtgggtttgatcacagtgacagatgcagatgctgga
gataatgctataatcaccttgtccattttgaatggcaaagataatttcatcattgaccct
caaactggtgtgatcaaaccaaatatcacctttgacagggagcagcaaagctcctataca
ttcatggtcaaagcagttgatggagggcagcctccaagttcctcctacgccaaggtcaca
attaatgttgtcgatgtgaatgacaatcgccctgtgtttgttatcccttcctccaattac
tcatatgacctggtgcgaaccaccactactccaggttctgtggtcaccagagtgtttgcc
attgacaatgacactggtatgaatgctgagttgcagtacagtatcatcagcagcattatc
atcacatctagggtctcccctagaggtctcttttccatcgacaaaacaacgggtaacata
acgctgcaggagaaaatagtactagctgatcagggactgcataggctggtggtgaaggtc
aaagatttaggccagcctgagtcattacacgctatttcacttgtacacttgtttgtcaat
gacactgtgtcaaattctacttttatccaagagcagctgcagaagagtatggaaacacca
ctggatcgtaatataggggacaatgagataacgcctcaagctaatggatatttaattgtt
gttatagcaatcattgcagggaccatgactgttattttggtgatatttgtcactgctttg
gtgcgttgccggcaaacacctagacataaagtagtccagaaaggcaagcaaagtggggag
tgggtgtcacccaaccaagagaaccgtcagatcaagaagaagaagaagagaaagaagcga
tcccctaagagccttctcctgaactttgtgaccatcgatgaatccaagcccgaagactcc
acacatgagcatgttaatggtactctggatcttccggtggagctggaggagcagaccatg
ggaaagtacaattgggcgaccacgcctacgaccttcaaacctgacagtccagatttagcc
aagcattataaatctgcatcccctcagcccacttttcaaatcaaaccagaaaccccagtg
gcccctaagaaacaccacgtgatccaggagctccccttggacaatacgtttgtggtgggc
tgcgactcactctccaagtgttcatcgactagctccgacccgtacagtgtctcagagtgc
agctgtcaggggggattcaagactgcagggcaaatcgccacccggcagaacccgggccag
acaccagagaagtcttttaactctccaccacccatttgtcctcataagtcaccagatctc
aatccagtagagcacctctgggatgtggtggaacgggagatttgcatcagggatttgcag
ccgactaatctggagcaactgtgcgatgaggcctgtcaacttggcaagataacctccatg
aatacccaacgccgtgtgaccttccatcttccagatggttcccaggaaagttgcagtgac
agcgggctgggggacctggatcccagcagcacagccagcgccatgcaacctctccccctt
agtttcccccaagatgagtactatgagcaaacatcgcctaacagtcgcacagagggagat
ggaaactcagatcctgaatctaccatcgaggtaaatttgaaaaaagctttggctgaggcc
tctgagacctgcacccaggagtgtctgatactgggccactctgacagctgctggatgccc
ccaaccctggcccagttccagagccctggcagcaacagccccaccccaaccaccaccacc
atcactgctgcattcccctcctttggctttcagggagtaaaagctaacataggcggcatg
ggggtcatggatggccgccacactctgggcaggtctgtgcccaaaagagatgaactggac
aaagggttccaccggccacagttctacaacaccctggatagacactgcagcagtaagaag
gaggacccggtgaaggtcatcccactggcaagtttctcctcgcctgggcagcacactcct
actggtggcagcagctctttcctacatgagcaccagctgtaa
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integrated database retrieval system
