Girardinichthys multiradiatus (darkedged splitfin): 124860377
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Entry
124860377 CDS
T08099
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu02010
ABC transporters
gmu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124860377 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124860377 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gmu02000
]
124860377 (abca1b)
Transporters [BR:
gmu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124860377 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
124860377
NCBI-ProteinID:
XP_047209627
LinkDB
All DBs
Position
23:51878727..51924611
Genome browser
AA seq
2293 aa
AA seq
DB search
MAAAADMSVCTQLGLLLWKNFTYRRRQTLQLLVEIIWPLFIFFILITVRLNYPPYEQHEC
HFPNKAMPSAGTLPWIQGILCNANNPCFRNPTPGESTGVVGNFNDSIISRLFSDAKKILL
HSQNDKSLESFKELARALEVLQNSRSGFKLKHFLRDNETLSSFLQRNTSLSQHGIQQITE
ADINLEKVLLRGFGVHLKDMCPRKGGTNTLGDFVTISDQQVASLVQEVLCQAQSIWLDQA
EEHFMSNLDFFKPIRRDVRSDPEAVQQVARATNNLLDSLGSLAVELAGMKSWVDLRNEIV
FLTQNATSSPSALYKAVSRIVCGHPEGGGLQIKSLNWYEDSNYKAMFGNHNSSEDATAVL
YDNSSTPFCNSLVQNMDSNPMSRMIWQALKPLLLGKILYTPHTPATQRIIHEVNRTFQEL
GVFRDLGGMWEEMKPKVWDFMENSPQMDVIRTLLKNNITASFFHTQLANTDWTVADISNF
LSKQPVEQPGSALTWREVFNETDQAIMSISRFMECVNLDKLELVSSEEQLVNRSMLLLED
RKFWAGIVFSDIAPNTTDLPPKVDYKLRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYI
WGGFLYLQDIIEQSIIRAVTGTKDKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWM
YSVSIILKSVVYEKEARLKETMRIMGLDNGILWLSWFISSLVPLLISAGLLVLVLKKGNL
LPYSDPGIVFLFLGSYAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQD
YITYGVKVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLQEDKFSLRTTIIMMY
FDSFLYGVFTWYIEAVFPGQYGIPRPWYFPFTKSYWFGAEGKSNKVPLSRKGNATAVCVE
EEPAHLEPGVYIENLVKVYHHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGL
FPPTSGTAYILGKDIRTDLSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVS
GEIEHILQDTGLPHKRGSRTSTLSGGMQRKLSVALAFVGGAKVVILDEPTAGVDPYARRG
IWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTL
VKKDPEPSLRSCKNSSSTVSFTKKDEESASVSSSDAGLGSEHESEAATIENGPAASIGSP
PFVPPDSSFVSSLILRHVPAARLVEDLGHEITYVLPYSAAKNGAFVKLFKDLDLKLHELG
ISSYGVSDTTLEEIFLKVAEDNGVDTEVPSDGTVPVWRRRRTHAFGGGDNQSCLRPNTED
DSNCNDSDGDADCRETDWLNGTEGKGSFQVKGWSLKRQQFVALMWKRFLYARRSRKGFFA
QIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISEDAPGDANMQKLLDSLL
DPPGFGTRCMDRYSIPESPCTMGDDDWNTPEIPESVQQLLSSRNWTMEDPSPACSCTCDG
RKRMLPDCPAGAGGLPPLEMKVSASDTLQNLTGKNISDYLVKTYAQIIGKSLKNKVWVNE
FRYGGFSLGARSTQVLPPANEINDAIKRVRKIFELQKGSAADRFLDNLSGFINGLDTKNN
VKIWFNNKGWHSAAAFINVMSNGILRANLPPGAEPGSYGISSFNHPLNLTKEQLSQVALV
TTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVHPLLYWVANFMWDMCN
YFVPATLVILIFVCFQQKAYVSSSNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVV
LTSVNILIGINGSISTFVMELFGDHEIGGINDILKNILLIFPHFCLGRGLIDMVKNQAMA
DALERFGESRFRSPLEWDMVGKNLFAMAVEGVVFFIITILIQYRFCIKPRAVSKLTKVGP
PGEEDEDVARERHRVVQGLGQGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDTRVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHL
ELYAILRGVPEREVCDVAEWGIRKLSLLKYADKRAGSYSGGNLRKLSTAISLIGAPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGPNPDLVPVMKFIESELSGSTLKEKHRNMLQYQLPSSLSSL
AHIFSIFAKNKDTLKIEDYSVTQTTLDQVFVNFAKDQSDDYLSKDASVRRKDVIIDVPAL
SSTCSAAEEESVI
NT seq
6882 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgcagacatgtctgtgtgcacacagctgggactgctgctgtggaagaac
ttcacctacagacgccgacagacgctccagcttctggtggagatcatctggccactgttc
atcttcttcatcctcatcacggtgcgactcaactaccccccatacgagcagcatgagtgt
cactttcccaacaaggccatgccctcagcgggaacgctgccatggattcagggaatcctc
tgcaacgccaacaacccgtgcttcagaaacccgacgccgggcgagtctacaggcgttgtc
ggaaacttcaacgactccataatttctcgcctgttttcggatgcaaagaagatccttctg
cacagccagaatgataaaagcctggaaagcttcaaggagctggctcgggccctggaagtt
ctgcagaacagtcgctcaggcttcaagttgaagcatttcctgcgagacaatgagaccctg
tcaagctttctgcaaaggaacacctccctgtcccaacacggcatccagcagatcacagag
gccgacatcaacctggagaaggtcctcctcagaggtttcggggtccacctgaaggacatg
tgtcccaggaaaggtgggacaaacaccttaggggactttgtgacaatctcggaccagcag
gtggcatctctggtgcaggaagttctctgtcaggctcaatccatctggctagaccaggct
gaggagcacttcatgagcaacctggacttcttcaaaccgattcggagggacgtccgatcg
gaccctgaagccgtccagcaggtcgctagagccaccaacaacctcctggacagcctgggt
tctctggctgtggagctggccgggatgaagagctgggtggacctgaggaacgagatcgtc
tttctgacgcagaacgccacatcttcgcccagcgcgctgtacaaggccgtctccaggatc
gtgtgcggtcaccctgagggcggtggcctgcagatcaagtcgctcaactggtacgaagac
agcaactacaaggctatgttcgggaaccacaacagcagcgaggacgccaccgccgtgctc
tacgacaactcctccactccgttctgtaacagcctggtgcagaacatggactccaaccca
atgtcccggatgatctggcaggccctgaaacctctgctgctgggaaagatcctgtacacc
ccccacacccctgccactcagaggatcattcacgaggtgaaccggactttccaggagctc
ggtgtgttcagggacctgggtggcatgtgggaggagatgaaacccaaagtctgggacttc
atggaaaacagcccgcagatggacgtgatcaggactctcctgaagaacaacatcactgcc
agcttcttccacactcagctcgccaacactgattggaccgtggccgacatctccaacttc
ctttccaagcagccagtggagcagcccggtagcgccctcacctggagggaggtgttcaat
gagacagaccaggccatcatgagcatctcgcggttcatggagtgtgtgaacctggacaaa
ctggagctggtctccagtgaagagcaactcgtcaaccgctccatgctgttgttagaggac
agaaagttctgggcggggattgttttttctgatatcgctcccaacaccacggatcttcct
ccaaaggtggactacaagctccgcatggacattgacaacgtagagcggaccaacaagatc
aaagacgcgtattgggacccaggtcctcgggctgacccgtttgaggacatgcggtacatc
tggggcgggttcttgtacctgcaggacatcatcgagcagtccatcatcagagcggtgact
ggcaccaaggacaaaaccggagtctacatccagcagatgccgtatccgtgctacgtggac
gacatcttcctgcgggtgatgagccgctccatgccgctcttcatgaccctggcctggatg
tattcggtgtctattatcctgaagagcgtggtgtatgagaaggaggcccggctgaaggag
accatgaggattatgggcctggataacggcatcctgtggctgagctggtttattagcagc
ctggttccgctactgatcagtgccgggctgctggtgctggtcctgaagaaggggaacctg
ctgccttacagtgaccctgggattgtcttcttgttcctgggatcttacgccgtggtcacc
atcatgcagtgtttcctcatcagcacaatgtttgctcgcgctaacctggcggctgcctgc
ggaggcatcatctacttcaccctgtacctgccctacgtgctctgcgtcgcctggcaggac
tacatcacatatggagtcaaagtgttcgctagcctgctgtcccctgtggcgttcgggttt
ggttgtgagtattttgcactgtttgaggagcagggagttgggatccagtggaagaacctg
gtgtcgagccctcttcaggaagacaagttcagcctccgcaccaccatcatcatgatgtac
ttcgactccttcctgtatggagtcttcacctggtacatcgaggcggtctttccaggtcag
tatggcatccctcggccctggtacttcccctttactaagtcatactggtttggggcggag
ggaaagtccaacaaagttcccctgagtcggaaaggaaacgctacagctgtgtgtgtagag
gaggagccagctcacctggagccaggagtctacatcgagaacctggtgaaggtttaccat
cacggtaagaaactagcagtggatggactgactcttggattctatgagggacaaatcact
tcattcctgggacacaatggagctggaaagaccaccacaatgtccatcctgaccggcctg
ttcccgcccacctctgggaccgcctacatcctgggtaaagacatccggacagatctgagc
gccatcagacaaagccttggcgtctgtcctcagcataatgtcctcttcagcatgctgaca
gtggaggagcacatctggttctacgcccggctcaaaggcctgtcagaggagcaggtgtcg
ggtgagatcgagcacatcctccaggacacagggctgcctcacaaacgtgggtccaggacc
agcaccctgtctggaggcatgcagagaaagctgtcggtcgccttggcctttgtcgggggg
gcgaaggtagtgatcctggatgagcccacagccggagtcgacccgtacgcccgcagggga
atctgggacctgttgctgaagtaccgacagggacggaccatcatcctatccacccaccac
atggacgaggcagacattctgggtgaccgaattgccatcatttcccatggaaagctgtgc
tgcgtgggctcatctctgtacctgaagaaccagctgggaacagggtactacctcacactg
gtgaagaaggacccggaaccctctctgaggtcctgcaagaactcatccagcacggtgtcc
ttcaccaagaaggatgaggagagcgcctcagtgagcagcagcgacgccggactcggcagc
gaacatgaaagtgaggcagccaccattgagaatggcccggctgcctccatcggctcaccc
cctttcgtcccaccggactcctcctttgtttctagcctgatcctgcgacatgtcccggcc
gcccgccttgtggaggacctgggacatgagattacttacgtgctgccgtacagtgccgcc
aagaatggagcctttgtgaagctcttcaaagacctggacctgaagctccatgagcttggc
atctccagctatggagtgtccgacaccacactggaggagatttttctgaaagtggctgaa
gataatggtgtggacactgaagtaccctcagatgggacagttcctgtttggaggcgcagg
aggactcacgccttcggaggaggagacaatcagagctgcctgaggccgaacaccgaggac
gacagtaactgcaacgactctgatggagatgctgactgtagggagacggactggctgaac
ggcaccgaagggaaaggctcattccaggtgaaaggctggagcctgaagaggcagcagttt
gtggcgctcatgtggaagcgtttcctgtacgcgcggcgctccaggaagggcttcttcgct
cagattgttcttccagctgtgttcgtctgcatcgctctggtcttcagcctcattgtgcct
ccctttgggaagtatcccagtctggagttgcaaccatggatgtacgaggatcaggtcacc
tttatcagtgaagatgctccaggagacgccaacatgcagaagttactggactctttgttg
gatcctccaggctttggtactcgttgtatggacagatattcaatcccggagtcaccctgc
acaatgggagacgatgactggaacaccccagagattcctgagagtgtccagcagctgtta
agctccagaaactggaccatggaggatccgtctccggcctgctcctgcacatgtgatggc
aggaagcgcatgctgccggactgccctgcaggtgccggtggactgccccccctggagatg
aaagtaagtgcctcagacaccctgcagaacctgacaggaaagaacatttccgactacctg
gtgaagacgtacgcccagatcattgggaagagcctgaagaacaaagtctgggtgaacgag
ttcaggtacggaggcttctcattgggtgccaggagcacacaggttcttccaccagccaat
gagatcaatgatgccattaagagggtccgaaagatctttgaattacagaagggatctgct
gctgaccgattcctcgacaatctgtccggctttatcaatggtctcgacacaaagaacaat
gtgaagatctggttcaacaacaaaggctggcacagcgcagcagcgttcatcaacgtgatg
agcaacggcatactgagagcaaacctgccgccaggtgcagagcctggcagctatggcatc
agttcctttaaccatccattgaacctgactaaggagcagctgtcccaggtggccctggta
acgacctccgtggacgtcctggtgtccatctgcgtgatcttcgccatgtccttcgtccca
gccagcttcgtggtcttcctcatccaggagcgcgtcagtaaagccaaacacatgcagttc
atcagcggcgtgcacccgctgctctactgggtggccaacttcatgtgggatatgtgcaac
tactttgtcccagcaacgcttgtcatcctcatcttcgtctgcttccaacaaaaagcctac
gtttcatccagcaacctaccagttcttgccctgctgctgctgctttatggctggtccatc
actccactcatgtacccggcctccttcttcttcaagatccccagcacagcgtacgtggtc
ctcaccagcgtcaacatcctcattggcatcaacggcagcatctctaccttcgtcatggaa
ctgtttggtgaccacgagattggaggcatcaacgacatcctgaagaacatcctcctcatc
ttccctcacttctgtctcgggcgaggactcatcgatatggtgaagaaccaggcgatggcc
gacgccctagagagatttggtgagagcagattccgatctccgctcgagtgggacatggta
ggaaagaacctgttcgccatggctgtggagggcgtggtcttcttcatcatcaccatcctc
atccagtacaggttctgcatcaagccaagagccgtcagtaaactcaccaaagtgggacca
ccgggagaagaagacgaggacgtggcccgggagagacaccgggtcgtacagggccttgga
cagggagacatcctggagcttcggcagctcaccaaggtgtttaagaggaagcagaagccg
gctgtggatcgactgtgtgtcgggattcctcctggagagtgtttcggtctgcttggtgta
aacggagccggaaaaaccaccaccttcaagatgctgacgggagacaccagggtgacaagc
ggagaggccttcctggctgggaagagcatcctgagggagatcgacgaggtccatcagaac
atgggctattgtcctcagtttgatgccatcaatgagctgctgacaggtagagaacacctg
gagctgtatgccatcctcagaggcgtccctgaaagagaagtgtgcgacgtggcagagtgg
ggaattaggaagcttagtctcctgaagtacgcagataaaagagctggaagttacagtgga
gggaacctgaggaagctatccaccgccatctctctgattggagcgccccctgttgtcttc
ctggacgagcccaccactggcatggaccccaaggcccgcagggccctttggaactgcatc
cacagcgtcatcaaggagggacgctccgtcgtcctcacctcgcacagtatggaggagtgt
gaggccttgtgcaccaggatggccattatggtaaacggcaggttcagatgtcttggcagt
gtccaacacctgaagaacaggtttggtgacgggtacaccatcatcctgcgggtggcaggg
cccaacccagacctggtgcctgtcatgaagttcattgagagcgagctgagtggcagcaca
ctgaaggagaaacaccgcaacatgctgcagtaccagctgccatcatcactttcatcgctc
gctcacatcttctccatcttcgccaagaacaaggatacgctaaagatcgaggactattcg
gtcacgcagaccactttagatcaggtgttcgtgaactttgcgaaggatcagagtgatgac
tacctgtccaaagacgcgtcagtgaggcggaaagacgtcatcattgatgttccagcgctg
agctccacctgcagtgccgctgaggaagagagcgtcatttga
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integrated database retrieval system
