Girardinichthys multiradiatus (darkedged splitfin): 124863252
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Entry
124863252 CDS
T08099
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124863252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmu03041
]
124863252
03009 Ribosome biogenesis [BR:
gmu03009
]
124863252
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124863252
Spliceosome [BR:
gmu03041
]
Complex A
U1 snRNP components
U1 related factors
124863252
Complex B
124863252
Ribosome biogenesis [BR:
gmu03009
]
Eukaryotic type
Pre-60S particles
Helicases
124863252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124863252
NCBI-ProteinID:
XP_047213514
LinkDB
All DBs
Position
X:13189778..13195294
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AA seq
627 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGSGPPRFGGSRGGGGGKFGNPGERLRKKQWNLDELPKFEKNFY
QEHPDVAHRSLQEAEQYRRSKTITVKGRDCPNPITQFHEASFPSYVVEVINKQNWTEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKTTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLESGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILVATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNLRQAGDLISVLREANQAINPKLLQMAEERG
GRFRGGRGGDFRDDRRDRYSSGRRDYGGGGRDRGYNNGPSKSYGTGSQNGVYGGGNGTSN
GYSGGNYNSNGQSNFSNNQTGSFAAQNNFQAQQFAPNKPVAQNGTSHTQFPFPQGQAPPQ
HPPPQHPPPQHPPPPLLPYSMPLQFSQ
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgaccgagatcgcggcagagatagagacagaggttatggcagtgga
ccaccccggtttggtgggagccgtggtgggggtggaggaaagttcggcaatccaggtgag
cggctgaggaaaaaacaatggaacctggatgagctcccgaagtttgaaaaaaacttttac
caggagcatcctgacgtcgcccatagatcactgcaagaagctgagcaatacagaaggtcc
aaaactattacagtgaaggggagggactgcccaaatcccataacccagttccatgaggca
agctttccctcctatgtggtggaggttatcaacaaacagaactggacagaaccaacacct
attcaagctcagggttggcctttggctctaagtggcaaggacatggttggcattgcacag
actggttctggcaagacgctttcttatcttctacctgcaattgtacacattaatcaccag
cctttcctggaacgtggggatggtccaatttgtttggtgttagcccccactcgtgagctg
gcccagcaggtgcaacaggtggcagctgaatatggcagagcttctcgtctgaagaccacc
tgcatctatggaggagcaccaaaagggcctcagctccgtgatttggaaaggggtgtagaa
atttgcatcgccactccaggcaggctcattgacttccttgagtctgggaagactaacctt
cgtagatgcacctacctggtgctggatgaggcagacagaatgctggacatgggatttgag
ccacaaatcaggaaaattgtcgaccaaattaggcctgacagacagactctgatgtggagt
gccacttggcccaaagaggttcgccaactggcagaagacttcctgaaggagtacgttcag
atcaacattggtgcgctacagcttagtgccaaccataacatcctccagattgtggatgtt
tgcaatgatggagaaaaggaaaacaagctaatccgtctgcttgaggaaataatgagtgag
aaggaaaacaagactatcatctttgtcgagacaaaaaggcggtgtgatgacctgactcga
agaatgagaagagatgggtggccagctatgggaatccatggtgacaaaagccaacaggag
agggactgggttcttaacgagttcaaatttggcaaagccccaatactcgtcgctacagac
gttgcatccagaggcttagatgtggaagatgtgaaatttgtcatcaactttgactaccct
aacaactctgaggactatatccaccgcattggaagaacggcccgtagccaaaagaccggc
acagcctataccttcttcacacccaacaacctgaggcaggctggggacctcatctctgtc
ctccgggaggccaaccaggcgattaatccaaagctcctccaaatggcagaagaaagagga
ggtcgtttcaggggcggcagaggtggagactttagagatgaccgtcgggataggtattct
tctggaaggcgggattatggtggtggtggtagggatagaggttataacaatggaccaagc
aagagttatggcacaggttctcagaacggtgtctatggaggcggtaacggcacaagcaac
ggttacagtggaggcaattacaacagcaatggacagtcaaacttcagcaacaatcaaaca
ggatcgtttgctgcccaaaacaactttcaggcccaacagtttgctcccaataagcctgtc
gcacagaatggcacaagccatactcagttcccgttccctcagggacaggctcctcctcag
catccccctcctcaacacccccctccacagcatcctcctccgccgctgttgccatactcc
atgcctctgcagttctctcagtaa
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