Girardinichthys multiradiatus (darkedged splitfin): 124864289
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Entry
124864289 CDS
T08099
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124864289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmu03041
]
124864289
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124864289
Spliceosome [BR:
gmu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124864289
Complex B
124864289
Complex C
U2 SnRNP specific factors
124864289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
124864289
NCBI-ProteinID:
XP_047214969
LinkDB
All DBs
Position
Y:35106937..35114654
Genome browser
AA seq
901 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEDSNVPPKSQTSFGASGSSGGYGKSPQLPSFYKIG
SKKANFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMQSGGGGGSDSEDDPLDAFMA
EVENQAAKDMRKLEEKEKEKKSSKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENV
DYDSDGNPIPSTTKKIIMPLPPIDHSEIDYPPFEKNFYNEHEELSSLTGSQILELRQKLN
LRVSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTG
SGKTAAFIWPILVHIMDQKELEPGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQEVELLLS
GSDKWNWLTRRLVEFTSTGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKV
ISDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTSKDTSFAGDLVRNLEGANQAVPKELMDLAMQNPWFRKSRFKGGRGKKLNIGGGGLGY
KERPGLGADSSERGSSLSSSSSFEGYSKPTTGAMGDRMSALKQAFQAQYKSHFVAATSGP
PKLSTKSSCSSGWTSAGSLNSVPTEAANGSERPNIAALSMSGFTSAGSLSSVPTTQTSSQ
YSNPSPAPPTHRESPRHGESQGRPGDSHQRYNDRSDRHSGEDRYGDRDRHGDRDRDRHGD
RDRHSSRHSDSRNGDGSRRDRDDRRSDRDGGDKGSGEGREKGDDSFAVPDPPKRRKSRWD
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaagggggtccaggggtgaagcgtgggtttggctttgggggtttttca
cttgcggggaagaaagaggactctaacgttcccccaaaatctcagacatcatttggagct
tctggatcaagtggtggttatgggaaaagcccacagcttccgtctttctataaaataggg
tccaaaaaagctaattttgatgaggaaaatgcgtattttgaagatgatgaagaagagtcc
agcagcaatgcagatctgccctacattcctgctgagaactcaccaacacggcagcagatg
cagtcgggtggcggtggcggttcagatagcgaagatgaccctttggatgcttttatggca
gaagttgagaaccaagcagctaaagacatgaggaaactagaagaaaaggagaaggagaaa
aaatcatccaagggtattcgtgatgacatcgaggaagaagatgagcaagaagcctatttc
cgctacatggcagagaatcctacagccgggctaacccaagaggaagaggaggaaaacgtt
gattatgacagtgatggaaacccaattccttctacaaccaaaaaaataatcatgcctctg
ccacctattgatcactcagagattgactacccaccctttgagaaaaacttttacaatgaa
cacgaagaactaagcagtctcactggtagtcagatcttggagttaaggcagaaactgaac
ttgcgagtttctggtgctgcccctccaaaaccttgcaccagctttgcccactttggcttc
gatgagcagctgatgcaccagattcgaaagtctgagtacactcagcccacaccgattcaa
tgtcagggtgtccccattgctctttctggacgtgacatgattggcatcgcaaaaaccgga
agtggtaagactgcagcttttatctggccgattctggttcatatcatggaccaaaaggag
ctggagcctggagagggacctattgcgataattgtgtgtcccactcgggagctttgccag
cagatccatgcagaatgtaagcgctttgggaaagcctactcgctgcgttctgtggctgtt
tacggaggaggcagtatgtgggagcaggccaaggctctgcaggagggagcagagattgta
gtgtgcacaccaggccgtctgattgaccatgttaaaaagaaggctacatccttgcagaga
gtgacatacttggtgtttgatgaggccgatcgcatgtttgatatgggctttgaatatcaa
gtgagatcaattgcaagccatgttcgcccagacaggcagactcttctcttcagcgctact
tttcgtaaaaagatcgagaggttggcgagggacattttggttgatcctattcgggttgtg
cagggtgacatcggagaggccaatgaagatgtgactcaggaggtggagctgctgctcagc
ggatcagataaatggaactggctgacccgaaggctggtcgagttcacctccaccggttct
gtcctcatttttgtcaccaagaaggctaactctgaggaactggccaccaacctaactcaa
gagggctacagcctcggtctcctacatggcgatatggaccagagcgagaggaacaaagtc
atcagtgacttcaagaagaagaacttgcctgttctggttgccactgacgtagctgcgcgc
ggtctggacatcccgtcaatccgcacagtagtgaactatgatgtggcacgcgacatcgac
acgcacactcacagaataggtcgaacaggtcgcgctggggagaaaggtgtggcctacacc
ctcctcaccagcaaagacacctcgtttgctggcgacctggtgcggaacctggagggagca
aatcaggctgttcctaaagagctcatggatttagccatgcagaatccctggttcaggaaa
tcccgatttaagggtggcagaggaaagaagctgaacattggtggaggtggtcttggttac
aaagagagaccaggcctgggggctgacagctctgaacgtggcagtagcttgtcttcctcg
agcagctttgaggggtatagcaaaccaacaactggagcaatgggggatcgtatgtctgca
ctgaaacaagccttccaggcccagtataagagccactttgtggctgcaaccagcggccct
cccaagctcagcaccaagtctagctgctcctccggctggacgagtgccggtagcttgaac
tctgtgccaacagaggctgccaatggctctgagcgacccaacattgctgctttatcaatg
tctggtttcaccagtgctggctccctgagctcagtgcccaccactcaaaccagttcacaa
tacagtaacccttcacctgcacctcccacacacagagagagcccgcgacatggggagtcc
cagggacgccctggagacagccatcaacgctataatgataggagtgatcggcatagtggt
gaggatcgctatggagaccgagatcgacatggagacagagatcgtgaccgccatggcgac
agggatcgccacagcagtcgccacagtgacagccgaaatggtgatggaagcaggagggac
agagatgaccggaggagtgatagggatgggggagacaagggaagtggagaggggagggag
aaaggagatgacagcttcgctgttcctgacccaccaaaacgcagaaagagccgatgggac
aactaa
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