Girardinichthys multiradiatus (darkedged splitfin): 124864435
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Entry
124864435 CDS
T08099
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124864435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124864435
03041 Spliceosome [BR:
gmu03041
]
124864435
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124864435
Spliceosome [BR:
gmu03041
]
Complex B
Other components
Prp19-related factors
124864435
Complex C
124864435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
124864435
NCBI-ProteinID:
XP_047215169
LinkDB
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Position
Y:27917786..27926371
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AA seq
849 aa
AA seq
DB search
MPSLNGKTDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIIDPAYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFAHNLPLPETALRVYRRYLKLSPENAEDYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWQKRVK
LHEGNPRQIINTYTEAVQTVDPMKATGKPHCLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDEDEDEDDEDQGPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttaaatggaaaaactgacgttatatttgaggatgatgatcttccttatgaa
gaggagattatcaggaatccatactcagtcaagtgttggatgcgctacattgaattcaaa
cagaatggacccaaatccacgctgaacatgatatatgaacgggctctgaaggaattgcct
ggaagctataagttgtggtacaattatttgagagaaaggagaaaacaagtcaaaggaaaa
tgcattatagatccagcctatgaggaggtcaataactgtcacgaaagggcactcgtgttt
atgcacaagatgcccaggatatggattgattactgtcagttcgtcgtgtcacagtgtaag
atcacaagaagtcggagaacgtttgacagggctctgagagcgctacctgtaacccagcac
ccacggatctggcctttgtatctgcgattcgctcataatctgccgctgcctgagacagcc
ctacgggtgtatcgaaggtaccttaagctatctccagagaatgcagaggactacatagac
tacttgcggtccgttggtcgcttggatgaagcagctgtgcgattagcagcaattgtaaat
gatgaaagcttcgtgtccaaagagggcaagtctaactatcagctgtggcacgagttgtgt
gacctgatctctcagaatcctgataaagtgacctctttaaatgttggagctattatacgt
ggaggcctcacacgcttcacagaccaacttggaaaactttggtgctctttggctgactat
tacatcaggagtggacactttgagaaagcacgggatgtttatgaggaagccatccttact
gtggttacggtaagggatttcacacaagtgtttgatagctatgctcagtttgaggaaagc
atgattgccgcaaagatggagaccactgctgagatgggacaagaggaggaagatgacata
gacctggaacttcgactggcacgctttgagcagctaattgcccggcgaccacttctgctc
aacagtgtactactgaggcagaacccccataatgtccatgagtggcaaaagcgagtaaaa
cttcatgaaggaaatccacgacagatcatcaacacatacactgaggcagtacagacagtg
gatccaatgaaggccaccggcaaacctcattgtctctgggtttcttttgctaaattctat
gaggaaaatgaacagctggatgacgccaggacgatctttgagaaagctactaaagtgaac
tacaaacaggtggatgacctcgctgcagtttggtgtgaatatggagagatggagcttcgc
catgagaactatgatcaggcactacgcatactgaggaaagctacagcaatcccatctaag
aaagcagagtactttgattcatccgagccagtacaaaacagagtttacaagtccctgaag
gtctggtcgatgttagcagacctggaggaaagtcttggcactttccagtctacaaaagca
gtgtatgatcgaattattgatctacgcattgccactcctcaaattgtcatcaattatgcc
atgttccttgaagaacacaactactttgaggaaagctttaaggcttatgagcgagggatc
gctctcttcaagtggcccaacgtttatgacatctggaacacttatctcaccaagttcatt
gatcgttatggcggcaaaaagttggagcgagctagagatttatttgaacaagccctggat
ggctgtcctgccaagtttgctaagaccatttatctattgtatgccaaactggaagaggag
tatggattggcacgacacgccatggctgtctatgaaagagcaacacaggcagtggaaact
gaagagagacaccatatgtttaatatctacatcaagagagcagcggaaatctatggagtt
acatacaccagagctatttaccagaaggctattgaggttcttcctgatgagcattcgagg
gacatgtgtatgagatttgctgacatggagtgcaaacttggtgagattgaccgtgccaga
gcaatctactcctactgctctcagatctgtgacccaagggtgacagccaatttctggcag
acctggaaggaatttgagatccgccatggaaatgaggacaccattagggagatgttgagg
atcaaacgcagtgtccaggctacatacaacactcaggtcaacttcatgtcctctcaaatg
ctgaaggcttcaacaagctctacaggcactgtttcagatcttgctcctggccaaatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaggctgagcag
gataagcccaaacccaaagaaaaaattctatttgtcaggagtgacacatctcgaagcgag
ttggctgagctttccaaacaagcaaatcctgatgagataaacattgatgaggatgaggat
gaagatgacgaggaccaaggacctgatgaggtgcagcttgagcagaagagtgttccaaca
gctgtgtttgggggccttaaggatgactaa
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