Girardinichthys multiradiatus (darkedged splitfin): 124865638
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Entry
124865638 CDS
T08099
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124865638 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124865638 (smg5)
03032 DNA replication proteins [BR:
gmu03032
]
124865638 (smg5)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124865638 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
124865638 (smg5)
DNA replication proteins [BR:
gmu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
124865638 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
124865638
NCBI-ProteinID:
XP_047216853
LinkDB
All DBs
Position
3:45296629..45320710
Genome browser
AA seq
1117 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDAIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASPREMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDI
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKHLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPAPTHGGAQPCPSEEEEEQLQHHSDSPYPVLPDNLI
FKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEDGESQVPPLHT
DAADDLEVRDLSAAEVGPSEERPLQNGSLEQEDEEDKDEEGFERVRVKKLSSEEDQHKPE
AEKQRQKKKYTRLSRLRRRRCARKGGPGEDESDLSEGFESEEEENDDEGERVRADSTGGT
TIDEPLNPSSVKKEMKRDALGEEGNWESGSEEEDGGTAFDVETDSDMNSQESRSDLEDME
ETENVEGQAREHQEEEQDQPREEGGERDSETPPSANGPLMQSDSSISSNLQAMSSQLFQS
KRCFRLAPTFSNMLLRPQAAASSGNPTSTETSAPPSQETPPPPGELHSDMTSGAANGTND
NDLVSDSEESQHSTQSAHSEKTLFEKLEILTNQGLMQVVKVFIDWLRTNTDIILMCAQSS
QSLWNRLSVLLNLLPDGSTMLQADLGLNAEVTEMLKECEQPGLIQNLLLPEDVALRHLPA
LSVAHRRLDFTRGNSSLSPLQECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSINQS
EQDNLVQQAKAQLRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVP
DAAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIRFLESEFRKGNRY
IRCQKESGRTFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTILTGHEVD
ELCTRSAAMKSATQAASSAGMELKNILEFYRQWKEIG
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagcctgaggcgaaagttcttcttatcaagcggctt
tacagggctgtggtggaatctgtgcacaagctggatgccatcatcggcagcaagtcatcc
tacagagaggtcttcaagccagagaacatcagcctgcggaacaagttgagagagctttgt
gtgaaattgatgtttcttcatccggtcgactacggccgcaaggctgaagagctgctgtgg
aggaaggtttactatgaggtcatccaggttattaagacaaacaagaagcacatccacagt
cgcagtgctctggagtgcgcctacagaacacacctcatcgctggcgtgggtttctaccaa
catctgctgctctacatccaatcacattaccagctggagctgcaggactgcatcgattgg
actcacgtcaccgatcctctcattgggcggaagaaacccgtgtcagcctctcccagggag
atggagtgggctcagatggcctgccatcgctgtctggtctacctcggagatctggcgcgg
tatcagaatgaacttgctggagtagaagctgaacagctggcagagagattttaccaccaa
gccttgtctgtaatgccccatgttggaatgccttttaaccagctgggaaccctggctggg
agcaagttctacaatgttgaagcaacatactactatttacgatgcatccaatcagatatt
ccgtttgatggggcctacggcaacctgaagcgcctgtttgacaaagctgccaagatgtac
caccaggtgaagaagcaggagatgaagaagctgtctccatctcggcaaagatccaaagac
attaagcatctcctggtgagcttcatgtaccttcagagcctgctgcagcccaaaaacagt
ttaatggagacggagctgacttctctctgtcagtcggtgctggaggacttcaacctcgtc
ctgttttatcttccggctccaacacacggaggtgctcaaccctgtccgagcgaggaagag
gaggagcagttgcagcatcacagtgacagcccctatcccgttctacctgacaacctcatc
ttcaagatggtggttacatgcctgatggtggtacacagccttaagagaggaggatcaaag
cagtacagcgcttccatagcttttactctggccctgttctcccatctcgtgaaccacgtg
aacatccggctgcaggctgaactggaggacggggagagccaggtgcctccgcttcacact
gacgctgcagatgaccttgaggtgagagatttgtcagctgcagaggtgggtccttcagag
gaaagacctctgcagaatggctccctagagcaggaggatgaggaggacaaggacgaagaa
ggctttgagcgagtcagagttaaaaagctcagcagtgaagaagaccagcacaagcccgag
gcggagaaacagaggcagaaaaagaagtacactcgcctttctcggctccggcggcgccgc
tgcgcacgcaaaggtggccctggggaggatgaaagcgatctgagcgaaggattcgagagt
gaagaagaagagaatgacgatgaaggagagagggtccgtgctgattcaacaggtgggaca
acaatagatgaaccgcttaacccttcatctgtgaagaaggagatgaagagggatgccctg
ggtgaggaaggcaactgggaaagtggctctgaggaagaggatggaggaacagcttttgat
gtggagaccgactcggacatgaacagccaagagtcccgctcagacctagaagacatggag
gaaaccgaaaatgtggagggtcaggcccgtgagcaccaggaggaagaacaagaccaaccc
agagaagagggaggagagagggacagtgagacgcctccaagcgctaatgggcctctcatg
caaagcgactccagtatcagcagcaacctccaggccatgtcctcccaactcttccagtca
aaacgttgcttccggctcgctccaacattcagcaacatgctgctgaggccccaggctgct
gcttcctcgggaaatcccacatctacggagacctccgctcccccatcccaggagacgccg
cctcctcctggagagttacacagcgacatgacctctggtgctgccaacggaaccaacgac
aatgacttggtctctgactcagaggaaagtcaacacagcacccagtctgcacacagtgaa
aaaactctgtttgagaagctggagattttgaccaatcagggcttaatgcaagtagtgaaa
gtctttattgattggctcaggacaaacacagatatcatcctcatgtgtgcacagagttcc
cagagcttgtggaaccgtctgtctgttctgttaaaccttcttccagatggcagcacgatg
cttcaggctgatctgggtctgaatgcagaggtgacagaaatgttgaaggagtgtgaacag
ccaggattgatccagaatttgctgctacctgaggatgtggccctgcgacacctgcctgct
ctcagtgtagctcaccgccgccttgattttacgcgaggcaactcctccctcagtcccctg
caggagtgtgtggtgcgtgtgtgctgcattcgcagttttggccacttcctaacaaatctc
caaggcaacgtcctgcacttcaacccagaagcgggaatctttaccagcatcaaccagtcc
gagcaggataatctggtgcagcaggccaaggcccagttaaggatggctgaagaggaggcg
cgtcgaaatcgtttaatgagagacatggcccagcttcgactgcagttggaggtttcacag
ctagagggcagccttcagcaacccaaagctcagtcatccatgtctccctaccttgttcct
gacgctgcagccctctgccagcatctgaatctcatccggcagctggctggcagcggctgc
ttcatcatcatcatcccaagaacagtgattgacgggcttgatcgattaaagaaggagaat
gctggtgcaagagacggcatccgctttttggagtcggaattccgcaaaggcaacaggtac
atacgctgtcagaaggagtcgggtcgcacttttgaaagagataaactaaaacggcaggac
attgaagcttggcacctgtataagatggtggacagctgccgacagctaacagtgtcccag
agcaacggagacgaagatacagccggcatggtgaccatcctgacgggccatgaggtggac
gagctctgcactcggtctgcagccatgaagtcggcgacccaggctgcatcgtctgcaggc
atggagctgaaaaacatcctggagttctaccgtcagtggaaggagatcggctga
DBGET
integrated database retrieval system
