Girardinichthys multiradiatus (darkedged splitfin): 124865670
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Entry
124865670 CDS
T08099
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124865670 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124865670 (smarcc1a)
03036 Chromosome and associated proteins [BR:
gmu03036
]
124865670 (smarcc1a)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124865670 (smarcc1a)
Chromosome and associated proteins [BR:
gmu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124865670 (smarcc1a)
PBAF complex
124865670 (smarcc1a)
GBAF(ncBAF) complex
124865670 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
124865670
NCBI-ProteinID:
XP_047216928
LinkDB
All DBs
Position
3:41521395..41546499
Genome browser
AA seq
1147 aa
AA seq
DB search
MATAATTAGGTGSGGSAAGPVGGGTAVARKKDGGPSTKFWESSETISQLETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPPLTKLPAKCFLDLKAGGTLCHILG
SVYKYKSEQGWRRFDLQNPSRMDRNVEMFLNVEKHLVQNNCLTRPLVYLSPEIEQKQASK
LKDIIKRHQGSVTEEKSKASHHIYPSLPQQEDEEWLRPVMRKDKQVLVHWGFYPDSYDTW
VSTGEVDGDVEDPPSTEKAWKVHAKWVLDTDTFNEWMNEEDYEVDESKKPVSFRQRIIPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHREEEDT
EEDMTKDMDDSSAGASMEDGCVSKNANSKKDSENTPVKGGNMADLDDMEDDSVLSGGKDD
DEQGKGEISRMDAGEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAESR
PLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQPMPNFADKAKDKPIDLQNFGLRPD
LYKKNAKQGKGASTTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP
IEDPYLESTETSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRV
REEVPAELVEAHVKKVQEAARSTGKVDPTFGLESSGIAGTAPEEPEKTESTEPEKMETNS
DSQQADKAELKDEAEKPSESAEKSDKMETAEKVKKEGAEASEHEQENEEEGETKAASTDK
DKDETMDSSSSEQEKDKEEKAANEEGDEKQKTLEHDIGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAATAAVQAQGQGSGSGPHPAPGPHPGPPPHGMHHGGP
LPHHGGPPATHLGGPPQHHGGPPPHHGGPPPGAAMHPGFPPMGHHTMAPHHPGQTGPMEP
GQPMPGRMLTGPPSGGPPPGGIPPMMPPRHPGAPNGMYPGPPPAQPEAVPPAPVAPPAPP
SGRVSDN
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacagcaggcgggacgggttcaggcggttcagccgctggtcca
gttggtggtggaaccgcagtagcacgaaagaaagacggcggtccttcaacaaaattttgg
gaaagttcagaaacgatttctcagcttgagacagtgcgactttggatcggaaagcactac
aagaagtatgttcaaaatgactctccatctagtaaatctctggctggcctggtggtccag
ttgcttcagttccaagaggatgcgtttgggcgcagggtcaacaatccccctcttaccaag
ctacctgccaaatgtttccttgatttgaaggcgggaggtactctctgtcacatcttggga
tcagtttacaagtacaaaagcgaacagggctggaggagatttgacctgcagaatccgtca
cgaatggaccggaatgtggaaatgttcctaaatgtcgagaagcacctggtccagaataac
tgcttgactcggcccctcgtctacctgtcaccagaaattgagcaaaaacaagccagcaag
ctcaaagatatcatcaaaaggcaccagggttccgtcactgaggaaaagtcaaaagcgtct
catcacatttacccctctctgccacagcaagaagatgaggagtggctgcgtcctgtcatg
aggaaggacaagcaggttcttgttcactggggcttctacccagacagctatgacacctgg
gtatcaaccggtgaggtggatggtgatgtggaagatcctcctagcactgaaaaagcctgg
aaggttcatgccaagtgggttttagacacagataccttcaatgagtggatgaatgaggag
gattacgaggtggatgagagcaaaaagccggtcagcttccgccagaggatcatccccaaa
gaagaagagtcttcccgtacacccgatcgcaaggagcgcaaggccaactctgccggcaag
aagaggagacgctccccctcgccccccagcaccccagctgagtcccggaaaaaaggagga
aagaaggggaacccagggcctcattggaagcgacggggacacagagaggaggaggacaca
gaggaagacatgacaaaggacatggatgactcctctgctggcgccagcatggaagatggc
tgtgtgtccaagaatgctaattcaaaaaaagacagtgaaaatactccagtcaagggaggg
aatatggcagatttggatgacatggaagatgattctgtgctgtccggtggaaaggatgat
gatgaacaaggcaaaggagaaatcagtcggatggatgctggagaggacaacgtaactgaa
cagacacatcacatcatcattcccagctatgctgcctggttcgactacaacagcattcat
gagattgagagaagagctcttccagagttctttaatgggaagaacaagtccaaaactcca
gaaatatacctggcctatcggaacttcatgattgacacgtatcggctgaaccctcaggag
tacctgacctccacctcctgtcgcagaaacctgactggggacgtctgtgctatcatgagg
gttcatgcattcctggagcagtggggtttggtcaattaccaggtggatgctgagagtcgc
ccgctacccatgggcccccctcctacaccccacttcacagtgctggctgacaccccctct
ggcctcatgcccctcaaccaccgacctccacctattcctcctccacagccaatgcccaac
tttgcagataaggccaaagacaaaccaattgacctgcagaactttggcctccgcccagac
ctctacaagaaaaacgccaagcagggaaaaggagccagcaccaccagagaatggactgag
caagagactctgctgctgcttgaggccctggagatgtacaaagacgactggaacaaagtg
tcggagcacgttggttcacgcacccaagatgaatgtatcctgcactttctgcggctgccc
atagaagatccatatctcgaaagcacagaaacgtctctgggccctttggcctaccagcct
attcccttcagccagtctggaaaccctgtaatgagcacagtagccttcctggcttctgtt
gtggatcccagagtggcatctgctgcagccaaggcagctttagaggagttctctcgtgtg
cgtgaggaagttccagccgagttggtggaagctcacgtcaagaaggtgcaggaggcagca
aggagcacaggcaaagtggaccccacatttggccttgagagcagcggcattgctggaacg
gcccccgaggagccagaaaaaacagaaagcacagaaccagaaaagatggaaacaaattca
gactcccagcaggctgataaggctgagctgaaggatgaggcagaaaagcccagtgagtct
gcagagaaaagcgacaagatggagaccgcagaaaaggtgaagaaggaaggagcagaggca
tcagagcatgaacaggagaatgaggaggaaggggagactaaagcagcttcaacagataaa
gataaggatgaaactatggactcctcatcttcagagcaagagaaggataaggaggaaaag
gcagctaatgaggagggagatgaaaagcagaaaacgttggaacacgacattggagaggga
aacatcgctacagctgctgctgctgctcttgcatctgctgccaccaaggctaagcacttg
gcagcagttgaggaaaggaaaatcaagtctctagttgctttgctcgtggaaacccagatg
aagaagttggaaatcaagttgagacacttcgaagagcttgagaccatcatggaccgtgag
aaagaagctttggagcttcagaggcagcagctcctcaccgagcggcaggccttccacatg
gagcagctgaaatacgctgagatgaaggcgagacaacagatggagcagcaggccgctgct
gccgctgccgccgccaccgccgccgtccaggcacaaggtcagggttctggatcaggcccc
catcctgctccaggcccccatcctggccctcctccacatggtatgcatcatggcgggccc
ctgccccaccatggaggacctcctgctacccaccttggaggacccccgcaacaccatgga
gggcctcctccccaccacggtggacccccaccgggtgctgcaatgcatcctggatttccc
ccaatgggccaccacaccatggccccccatcacccaggacagacaggaccgatggaaccg
ggtcagccaatgccaggacgcatgctgaccggtccaccctctggcggcccacctccaggg
ggcattcctcccatgatgcccccacgtcaccctggagcccccaatggcatgtatcctggt
cccccacctgcacagcctgaggcagtgcctcctgcacccgtggctcctccagcacccccg
agtggacgagtgtctgacaattaa
DBGET
integrated database retrieval system
