Girardinichthys multiradiatus (darkedged splitfin): 124868470
Help
Entry
124868470 CDS
T08099
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124868470 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124868470 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124868470 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gmu00535
]
124868470 (col9a1a)
Proteoglycans [BR:
gmu00535
]
Extracellular matrix (ECM) proteoglycans
Others
124868470 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124868470
NCBI-ProteinID:
XP_047221748
LinkDB
All DBs
Position
5:4598362..4630624
Genome browser
AA seq
687 aa
AA seq
DB search
MALLRIHQEPLLVVLLQIMLICSAQRGPPGPRGSPGPPGIPGVPGVDGIDGERGEDSTVT
GPIGPAGDNGKDGSSGAPGVPGADGLVGPPGDPGPVGSKGSKGEPGGRGPAREPGVGPDG
TDGIPGTDGLPGELGRAGPSGVKGRRGPVGLPGPAGPRGPPAVYQGEDLCPNACPAGLTG
YSGLPGMKGHKGAKGESGEPGRQGHKGEEGDQGPPGEVGAQGLPGQGGPRGLPGIMGPKG
DRGPRGRPGDVGPRGIQGAPGDPGQRGAIGESGQIGAQGARGPPGIRGAPGPKGEPGLPG
PDGREGIPGLPGSKGLPGKSGAPGDAGTQGLPGLPGTYGQKGHSGAKGIVGDPGVVGLMG
SPGKQGERGDQGEVGPAGPRGGPGERGERGPDGPLGSPGARGGKGDPGFPGLPGPAGYRG
QKGDRGSVGLTGPKGDQGPSGVEGIPGDKGEVGDQGEPGEKGSQGPPGETGNKGPEGGRG
LPGKEGKLGQPGPRGMQGDTGVPGLPGQQGPAGKPPTDRHIKQVCMRVMQEQLAQLAASL
RRPESGIAGLPGPPGPPGPPGAPGENGFPGHSGSRGLPGFKGPPGLIGLKGPKGDQGDQG
DRGPTLRGSKGEPGVPGLPGEPGQPAYGTNGRDGERGPRGVPGINGVPGPPGPAGRNGYC
ESSQCVLAMVASFGLEKNSETKGPSEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctcctcaggatccatcaggagcctttgctggtggttttattgcagattatgttg
atttgctctgctcagaggggcccacctggtcccagagggtcccctggaccgcctggcatc
cctggagtacctggagtggatggaattgatggcgaaagaggagaagactccactgtaact
ggaccaataggtcctgccggagataatggcaaggacgggtcttctggagctccaggcgtt
ccaggagcagatggacttgtgggacctccaggagatccaggccctgtgggctcaaaaggc
tcaaaaggggaacctggaggccggggacctgctagagaacctggtgtaggacctgatgga
accgatggtattcctggtacagatgggctaccaggtgaactgggaagagcaggaccctct
ggagtaaaaggaaggagaggtcccgtcggtctacctggtcctgctggtcctcggggacct
ccagctgtttaccagggtgaggacctgtgtccaaatgcctgccctgcaggtctgactgga
tattctggactccctgggatgaaaggccacaaaggggctaagggcgaatcaggtgagccc
ggaagacaaggacacaagggggaggagggcgatcagggaccccctggtgaagttggagct
caaggactgccaggccaaggtggaccaagaggccttccaggaataatgggccccaaagga
gacaggggacctcgcggaaggcctggtgatgtaggtcctcggggaattcagggagcacca
ggggatccaggtcaacgaggagcaataggggagagtggacagataggagcgcagggggcc
cggggcccaccaggaatcaggggagcaccagggccaaaaggagaacctggccttcctggt
ccagatggtcgtgagggaatacctgggctgcctggttcaaagggtctaccaggaaaaagt
ggggctccaggtgatgcaggcacacagggacttcctggtttaccaggtacatatggccag
aaaggacacagcggtgctaagggcatcgtaggggacccaggagttgtgggactgatgggg
tctccggggaaacaaggggagcgtggagaccagggggaggtgggacctgccgggcccaga
ggaggacctggtgagcgtggggagagaggacctgacggacctttaggatcaccaggagcc
aggggaggcaaaggggatccaggctttccaggacttcctggtcctgctggttaccgaggt
caaaagggggacaggggttctgtgggtctcaccggccctaaaggagaccagggaccttca
ggtgttgaaggaataccaggagataaaggcgaagtgggtgatcaaggtgaaccaggagag
aaaggatcgcaaggtccaccaggagagacaggaaacaagggacctgaaggcggccgtggg
ctgccaggcaaagagggcaagctcggtcagccaggaccacgaggcatgcagggagacaca
ggggtaccgggactacctggacagcagggaccagcgggcaaaccaccaacagacagacac
atcaaacaggtctgcatgagagtaatgcaagagcagctggcccagttagcagccagcctg
agaaggccggaatcaggcatcgccgggctgcccgggcctcctggcccacctggaccacca
ggtgcccctggagagaatggctttccgggccactctgggtcaagaggtctccctggtttt
aagggtccacctgggttaatcggcctgaaaggaccaaaaggtgaccagggagaccaaggg
gacagaggtcccacactgagagggtccaaaggggaaccaggggtccctggtctaccaggt
gaacccggtcaaccggcttatgggacaaacggccgtgatggagaacggggaccacgtggt
gttcctggaatcaatggcgttcccgggcctcctgggcccgctggcaggaatggctactgt
gagtcttcgcagtgcgtccttgccatggtggcatcgttcggcctcgaaaagaactctgag
acaaagggccccagcgaaatgtga
DBGET
integrated database retrieval system
