Girardinichthys multiradiatus (darkedged splitfin): 124869296
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Entry
124869296 CDS
T08099
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124869296 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124869296 (smg7)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124869296 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
124869296 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
124869296
NCBI-ProteinID:
XP_047223031
LinkDB
All DBs
Position
6:complement(47184447..47216935)
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AA seq
1188 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGATEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSGGSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLDKLDALREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLTADSNEPSCSGEQQISWFQLLGLFMSFLGVMCSRVLLNKNQGEEIMGECP
LPAIKLSLDWLKLRPSIFQEAAVEKRKYIWPWLVSILNSFQPREEDLSSSSSAMPLPEEF
ELQGFLALRPALRCLDFTKGHQGILVDRDGLPVHARHQRLTALGKWVADNQPGLIQCQVN
EDGLLLFLTDIPEEAIEEPQERDAPVLQESSNGEQTQNDSGNSGLKSVLSAGKTQSSWSD
SSERPVVTFKENIKPREQSQEPARNHPQKEFSKERREFPKGNGTAAGKGEMKRDGKRKSE
MKKAGHEKTADVGKQVKAQTELRKTPVSEVKKTPVTQTQTTCSSQFIPIHHPGAFPPLPS
RPGFPPSAYVIPPPVAFPGLQVNPGFTFSTGVSVPASFLQSAVHNQAGTQAGKQSHIPYS
QQRPSGPGSSGQGPGPMNQVPSPAQQQQPSPQQALQQSVQLQVQALSQQQQSPTKPVQQV
GMGKSPPHHPGLQQYMQVQDQPAPMWSQSQAALQKMCMKQPQQQQQAFFMGAQDPLKLYE
QQLQQPAQPQISNLDKKMKFPDVKMQDFYWEPSYRMDRMGEGLAMMVERMKRPPPGGLCG
EQEVPAGPRGATFEDKSSPFLPPDLLKTLADFEEDEELIFAKPPDFFQALAGPLSTASGP
NIFLPNQSRMESSQEVVSQSSSLLPITGFPMQEFNHTSIFSRAYGKNLPPSSKPDAPMMQ
QEPSLYSLFEGNPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAVSFSNFGPI
GTPDSRDRRVLDRWKAEKPGTGFGLDYLPAAATSTAPDSSWHQGGSTGSSWTNQESPMEE
SSSTVLLDSLKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccagtacctgcgccaggcagaggccctgaaggctgacatgacagac
tcaaagctgggggctacagaggtgtggacctcccgccaggccctgcaggacctgtaccag
aagatgctggtgacggacctggagtacgctctggacaagaaggtggagcaggacctgtgg
aaccacgcttttaagaaccagatcaccacgctgcagagccaggccaagaaccgggccaac
ccgaaccgcagcgaggtccaggccaacctgtcgctgtttctggaggctgccagtggcttc
tacactcagctgctgcaggagctctgcaccgtcttcaacgtggacctgccgtgtcgcgtc
aagtcgtctcagctcggtatcatcagcaacaagcagagcggcggcagcgccatcgtcacg
cctcagcccagctcctgctcctacatctgccagcactgcctcgtccacctcggagacatc
gctcggtaccgtaaccagaccagccaggcagagtcgtactacagacacgcagctcagctg
gttccatccaacggtcagccctacaaccagctggccatcctggcctcctccaaaggagac
cacctcacaaccatcttctactactgtcgcagcatcgccgtcaagttcccgttcccggca
gcttccaccaacctgcagaaggctctgtccaaggctctggaaagtcgtgatgaggtgaaa
accaagtggagcgtgtccgatttcatcaaagcgttcatcaagtttcacggccacgtctac
ctgagtaagagtctggataaactggacgctctgagagagaagctggaggagcagtttcag
aggctgatcctgcagaaagccttcagctcccagcagcttgtccacatcaccgtcatcaac
ctgtttgagctgcatcacctccgagacctgacggcggacagcaacgagccgagctgcagc
ggcgagcagcagatcagctggttccagctgctcggactcttcatgtccttcctgggagtg
atgtgcagccgggttctgctcaacaagaaccagggggaggagatcatgggggagtgtcct
ctgccggctatcaagctgtctttggactggctcaaactgaggcccagcatcttccaggag
gctgcagtggagaagaggaagtatatctggccgtggctggtgtccatcctcaacagcttt
cagcccagagaggaagatctgtcctcctcttcctcagcgatgcccctgccggaggagttt
gagctccagggtttcttggctctgcgacccgctctcaggtgtctggacttcacaaaaggt
catcagggaatcctggtggatcgggacggtctgccggtgcacgcccgccaccagcggctc
acagctctgggaaaatgggtggcggacaaccagccggggctgatccagtgccaagtgaac
gaggacggcctcctcctcttcctcactgacattccagaggaggccatcgaggagccgcag
gagagggatgctccggtgctgcaggagtcatccaacggcgagcagacccagaacgatagc
ggcaactcgggcctgaaatcggtgctgtccgccgggaagactcagagctcgtggtccgac
agcagcgagcggcccgtcgtcaccttcaaggaaaacatcaaacccagagagcagagccaa
gagccggcacggaaccacccgcagaaagaattcagcaaggagcgccgggagttccctaaa
ggaaacgggacggctgccgggaaaggagagatgaagagggacgggaagaggaagagcgag
atgaagaaggctgggcatgagaaaacagctgatgttggaaaacaggtgaaggctcagacg
gagctgagaaagactccggtttccgaggtcaagaagactccagtcacacagactcagacc
acatgctcatcccagttcatcccaatccatcatcctggagcgttcccacctctgcccagc
agacccggtttcccaccctcagcctatgtgatccctcctcctgtggcgttcccaggactc
caggtgaatccaggattcaccttctccacgggagtgtcggtgcctgcttctttcctccaa
tcagctgttcacaaccaggcgggcacccaggccgggaagcagtcccacattccctacagc
cagcagagaccttcggggccagggtcctcaggccagggcccggggcccatgaaccaggtc
ccctccccggcccagcagcagcagccatccccccagcaggccctgcagcagtcggtccag
ctgcaggttcaggccctgagtcagcagcagcagtcacccaccaaaccggtgcagcaggtt
gggatgggcaagagtccgcctcaccacccgggactgcagcagtacatgcaggtccaggac
cagccggcacccatgtggagccagtctcaggcggccctgcagaagatgtgcatgaagcag
cctcagcagcagcagcaggccttcttcatgggagctcaggatcctctgaagctgtatgaa
cagcagctgcagcagcccgctcagcctcagatctccaacttggacaagaagatgaagttc
cctgacgtcaagatgcaggacttctactgggagccatcctaccgtatggacaggatgggg
gaggggttggcaatgatggtagagaggatgaagaggcctccgcctggtgggttgtgtgga
gagcaggaggttcctgcagggccccgaggagccacatttgaggacaagagctcgcctttc
ctacctcctgacctgttaaaaactctagcagattttgaggaggacgaggagctcatcttt
gctaagcctcctgatttcttccaggccttggccggccctcttagcactgcttctggacca
aatatctttctgccaaaccagagcaggatggagagcagccaggaggtcgtcagccaatct
tcttctctgctgcccatcaccggcttccccatgcaggagtttaaccacaccagcatcttc
agtcgggcgtatggtaaaaacctgcctcccagctccaaacctgatgctcccatgatgcaa
caggagccctccctgtactccctgtttgaggggaacccctggtccccctccctccctgcc
agctcagaccactccaccccggccagtcagtccccccactcctccaaccccagcagcctg
ccctcctccccacccactcacaaccacggagccgtgtccttctccaacttcgggcccatc
ggaactccggacagccgagaccgccgggtcctggaccgctggaaggcagagaaaccagga
accggctttggtctggactaccttccagctgcagccacctccacggcgcctgattccagc
tggcaccagggtggctccacggggagctcctggaccaaccaggagtctcctatggaggag
tcatcttcaactgtgctgcttgatagcctgaagtccatctggtccagctctatgatgcag
ccgggcccgtcggcgctggagcagctcctcctgcagcagaagcagaagcagcagcgaggt
cacggcgccatgaacccgccgcactga
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integrated database retrieval system
