Girardinichthys multiradiatus (darkedged splitfin): 124869545
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Entry
124869545 CDS
T08099
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03013
Nucleocytoplasmic transport
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124869545
03015 mRNA surveillance pathway
124869545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124869545
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124869545
5.6.2.5 RNA 5'-3' helicase
124869545
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124869545
mRNA cycle factors
Common to processing body (P body) and stress granule
124869545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD_C_2
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
124869545
NCBI-ProteinID:
XP_047223412
LinkDB
All DBs
Position
6:complement(4147712..4174803)
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AA seq
1108 aa
AA seq
DB search
MSVETYGPSSQTLTFLDTEESVLLGADTQGSEYDFIDFTLPSQTQTQGQTQSQLDNQVNG
PAVELQNGDDPVIKTSQLLAELNFEEDEEDAYYTKDLPLHACCYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPAAALEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQENITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPQNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGTGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFNKPRKLVN
AINPGGRFMSTAMYNAREALIPGSAYDRSSNGRPSNMYFQTHDQIGMIGSGPSPVSSMNI
PIPFNLGIPPIPPPGYLGQMNGPSAGRGGRIENKSVGSGGTRGGRQKNPGTMGNGGIDHE
LHGGHMTGSQASQDQGSQQYSQGPLTQGYHNMSQPSQMSQPGLSQPELSQDSYLGDEFKS
QIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggagacgtatgggccgagctcgcagaccctgacgtttctggacaccgaggaa
tcggtgctgctgggagcggacacccagggctccgagtacgacttcatcgattttacctta
ccgagccagacgcagacgcagggccaaacccagagccagttggataaccaggttaacggt
ccagctgttgagctgcagaatggagacgaccctgtgataaaaaccagccagctgcttgca
gaattaaactttgaggaagatgaggaggatgcttactataccaaggaccttccattgcat
gcttgctgttattgtgggattcatgatccagcctgtgtggtctactgcaacaccagcaag
aaatggttttgtaatggccgtggaaatacgtctggcagccacatcgtaaaccacctggta
agggcaaagtccaaggaggtgaccctgcacaaagatggccctctgggagaaactgtgctg
gagtgctacaactgtggctgtcgcaacgtcttcttgttgggcttcattcctgccaaggcc
gactcagtggtggtgttactctgcagacaaccatgtgccagccagagtagtctcaaggat
ataaactgggacagctcacagtggcagccactcatccaggaccggtgcttcctctcctgg
ctggttaaaatcccctcggagcaggagcagctccgggcccgacagatcactgcacagcag
ataaataagctagaggaactatggaaggaaaatcctgctgctgctctggaggacctggag
aagcccggagtagatgaggagccacagcatgttctcctgcgttatgaggatgcctatcag
tatcagaacatctttggtcctcttgtgaagctggaggctgactatgataaaaaactgaaa
gagtcacagactcaagaaaatataaccgtcagatgggatctgggcctgaataagaaaagg
attgcttatttcacccttcctaagactgactccgatatgcgactgatgcagggtgatgaa
atttgcctcagatataaaggagacctggcccctccatggaaaggcattggacacgtcatc
aaagtcccagacaactatggggatgagattgccattgagctcaggagcagtgctggagct
ccggtggagatccctcaaaactttcaggtggactttgtgtggaagtccacctcctttgac
agaatgcagagtgccctgaaaacatttgctgtggatgagacttcagtgtcgggttacatc
tatcacaagttgctgggacatgaggtggaagatgtggtcattaagtgccagttgcctaaa
cgcttcactgctcaaggcttacctgacctcaaccactctcaggtgtatgctgtgaagaca
gtgttacagcgccctctcagtctgatccagggtccccctggcacagggaagacggttacc
tcagccaccatagtgtaccacctggctagacagggaacagggccagtgctggtgtgtgct
cccagtaacattgccgttgaccagttgactgagaaaattcatcagacggggctcaaggta
gtgagactttgtgccaaaagcagggaagccatagattcacctgtgtccttcctggctctt
cacaaccagacccgtaacatggacagcatgccagagctccagaagctccagcagctgaag
gatgagactggagagctgtcgtcctctgacgagaaacgctacagagccctgagacgtact
gctgagagagagctgcttatgaatgctgatgtgatctgctgcacatgtgttggagcggga
gatccccgtctggctaaaatgcagttccggtccatcttgattgatgagagtacccaggcc
acagaaccagagtgcatggtgcctgttgttcttggggccaaacagctcattctggtgggc
gatcactgccaactaggacctgttgtgatgtgtaagaaggcagctaaagcaggcctttct
cagtctctgtttgagcgtcttgtagttttgggcatcaggccgatccgtctgcaggttcag
taccgcatgcacccggctctcagcgccttcccctccaacatcttctacgagggctcctta
cagaatggcgtcactgctgctgatcgggtgaaaaaaggctttgatttccagtggccacag
cctgacaagcccatgttcttttatgtcacccaaggccaggaggagattgccagctctgga
acatcatatctgaacagaactgaggctgccaatgtggagaaaataaccacaaggttactg
aaggctggtgctaagcccaatcagattggcatcatcactccctatgaaggacagagatcc
tacctggtccagtacatgcagttcagtggttcccttcataccaagctctaccaggaggtg
gaaatagccagtgtggatgctttccaaggcagagagaaagacttcatcatcttatcctgt
gtgagggccaatgagcaccagggaattggcttccttaatgaccccaggcgtctcaacgtg
gcactcaccagggccaggtacggtgtgatcattgtggggaatcctaaggctctatccaag
cagcctttgtggaaccacctgctgaattactacaaagagcagaaggtcttagttgaaggc
cctttaaacaacctgagagagagcctcatgcagttcaacaagccacgaaaactagtcaat
gccattaaccctggtgggcgtttcatgagcacagccatgtataacgccagggaggcgctg
attcctggatctgcctatgatcgcagcagcaatggccgtccgtccaacatgtacttccaa
actcatgaccagattggtatgatcggttcaggacccagtccagtgtcgtccatgaacatt
cctattcccttcaaccttgggattcctcctatacctccacccggttatttaggacaaatg
aacggtccctctgcaggtcgtggtggaaggatagagaacaaatcagtcgggagtggagga
acgcgaggtgggcgtcaaaaaaaccctggcaccatggggaatggaggaatagaccacgag
ctacatggaggacacatgactggcagccaggctagccaagaccagggctcccagcaatac
tcccagggccccctcactcagggctatcacaacatgagccagccatctcagatgagccag
ccagggctctcccagcctgaactctcacaggacagctacctaggagatgaattcaagtcc
cagattgatgtggctctctcccaggactccacctaccagggggaacgggcctaccaacat
ggtgtgactggactgtcccagtattag
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integrated database retrieval system
