Girardinichthys multiradiatus (darkedged splitfin): 124869775
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Entry
124869775 CDS
T08099
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124869775 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124869775 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124869775 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmu04147
]
124869775 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124869775 (col6a1)
Exosome [BR:
gmu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124869775 (col6a1)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124869775 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
124869775 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
Motif
Other DBs
NCBI-GeneID:
124869775
NCBI-ProteinID:
XP_047223850
LinkDB
All DBs
Position
6:complement(11699463..11730276)
Genome browser
AA seq
1007 aa
AA seq
DB search
METFRCLLALFFALLARAQIQIQKPTFVDCPVDLFFVLDTSESVALRQKPPNFYIDQIKE
FTKRFVDELQEMRHQCDRILMWNSGALHYSDEVIIVRELSNMRTERQALKEDIDAITYIG
KGTYTDCAIKRGLAELLVGGSHYHENKYIVVVTDGHPVTGYKEPCGGVQEAANEARQHGV
KVFAVAISPDQEDTRLSLIATDQSYRQNFTAADETRSTKMKTIRTIINMITNETKDVCCS
FDCNAPGGSKGPDGDTGAKGELGRPGMPGEKGEIGPLGSDGDPGPVGYSGMKGDRGPRGD
KGERGHKGFKGDKGQRGLDGIDGQKGVAGFPGLPGCKGGPGSDGLQGEPGPKGDPGPYGK
KGEKGEQGRNGEPGRPGNYGPQGRPGEPGNSGLRGDKGERGEDGPPGPDGAGGEGGQIGE
KGEQGSRGNRGPRGDPGEPGPRGEQGREGSTGANGEPGEPGRSGPPGYRGDEGSPGPEGP
KGPRGIRGSSGDRGPIGERGVTGGQGNGTKGCPGFQGYPGPRGDNGEPGTKGTPGPKGDD
GEPGDSGRDNNELGPPGPKGAKGHRGSEGRPGPPGPPGPAGTDECEILDIIMKLCSCCEC
KCAPVDLAFIVDSSESIGATNFALAKDFIITVIDRLIKDHLVKFAMNQSTVSVVQYSGSQ
AQEAVRLTTSLADFKQTVRDLRWLAEATYTGEALEYALTNTINEMRKDNKVVLVLTDGRS
DISRDKTPLNVLCGKDILVGGLGVKDYSGRQPNQEQLQSVTCESDPKPGFSFVLDNFAEL
LDDNFLQNLTARICQEKKCPDYKCPISFSQSTNILVMMDSSASVGQKNFETSKTFVKHLA
KRFLAAEKKGGVTVRVGVGQYSQSNPRLEQPLTTNFTLLSSKIEEAQFQNEGTDVLQAMQ
FAINSLPSRGDASGVKRKLVLFSDGRSQRVTNVVLEKRVREVADSGIELFVISIGNQVNE
VNLRTLVSRGRVQDISYAQRHLFRVADYPSLLRGVFHQTVSRRVSLP
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggagactttcagatgtctccttgcgctgtttttcgctctcctggctagagcgcaaatt
cagatccaaaagcccacctttgtagactgtcccgttgaccttttctttgtgctggatacg
tctgaaagcgtcgccctcagacagaagcctcccaacttttatatcgaccagatcaaagaa
ttcaccaaacgcttcgtagatgaactccaagaaatgcgccaccaatgtgatcgcatcctg
atgtggaactcaggagccctgcactacagcgacgaggtcatcattgtgcgagagctgagc
aacatgcgcacagaacgccaggccctaaaggaagacatcgacgccatcacctacattggc
aaaggaacctacactgactgcgccatcaagaggggcctggcagagctgctcgttgggggt
tcccactaccatgaaaacaagtacatcgtggtagtgactgatggccatcctgtcactggt
tacaaagagccatgtgggggtgtgcaggaggctgctaatgaagccaggcagcatggagtt
aaagtgtttgctgtggccatctcacctgaccaggaggacaccagactgtccctcatcgcc
acagaccagtcctacaggcagaacttcactgctgcagatgaaaccagatccaccaagatg
aaaactattcgaaccatcatcaatatgattacaaacgagaccaaggatgtgtgctgctct
tttgactgcaatgctcctgggggttcaaaaggaccagatggggacactggcgccaaggga
gagctgggtcgaccaggaatgccaggagagaaaggagaaattggccctctgggcagcgat
ggtgatcctggtccagttggctacagcgggatgaagggagaccgcggtcccagaggagac
aagggtgaaaggggacacaaaggctttaagggtgacaaaggtcaaagagggttggatgga
atcgatgggcaaaagggtgtagctggtttccccggtcttcctggttgtaaaggaggtcct
gggtcagatggcctgcagggagagcctggaccaaagggggaccctggcccttatggaaaa
aaaggggagaaaggggaacaaggaagaaacggtgagccaggacgacctggaaactatgga
cctcagggacgtcctggagagccaggcaattctggacttcgtggagacaaaggagagcgc
ggtgaggatggaccacctggaccagatggagctggtggagaaggaggacaaatcggcgag
aagggggagcaaggttctcgcgggaacagaggcccaagaggagaccctggggagccggga
ccacgtggagagcaggggagggagggctcaaccggtgccaatggagaacctggtgagcca
ggaagaagcggccctcctggctacaggggagacgaaggttcaccaggaccagaggggccc
aaagggccaagaggaatcagaggatcatcaggagacagaggcccaataggggagagggga
gtgactggtggccaaggaaatggcaccaaaggctgtcctggcttccaaggttaccctggg
ccacgtggagacaacggtgagccgggtaccaagggaactcccggacccaaaggagatgat
ggagaacccggagattcaggccgagataacaacgagcttgggcctcctggacccaaaggg
gccaaaggtcatcgagggtctgagggcagaccgggtcctcctgggccgcctggaccagca
ggaactgatgaatgtgaaattctggatatcatcatgaagctttgctcttgttgtgagtgc
aagtgtgcccctgtagacctggcatttatcgtggacagctcagagagtatcggtgcaaca
aactttgcacttgccaaagatttcatcatcacagttattgacagactgattaaagaccat
ctagtcaagttcgcaatgaaccagtcaactgtcagtgtcgtccagtacagtggatcgcaa
gcccaagaagctgtgagactaacaaccagcctcgctgattttaaacagacggtgagagac
ttgcgctggctggctgaggccacttacacaggcgaggcacttgaatatgctttgaccaac
acaatcaatgagatgaggaaagacaacaaagttgttctcgttctcactgatggacgctcc
gatatctccagggacaagactcctctcaatgtgctctgtgggaaggacatcttggtgggc
ggtttaggagttaaagactactcaggccgccagcccaaccaggagcagcttcagtctgta
acgtgtgagagcgatcccaaaccaggattttcctttgttctggataactttgctgagctg
ctggatgataatttcctacagaatctcacagccaggatctgtcaagaaaagaaatgccca
gactacaaatgtccaatatccttctctcaaagtaccaacattttggtgatgatggacagc
tcagccagtgtgggccagaagaactttgagacaagcaagacctttgtcaaacacttggct
aagcgtttcctcgctgccgagaaaaagggaggtgtcacagtcagagtgggtgtcggccag
tatagccaaagcaaccctcgcctggagcagcctctaactaccaatttcaccttgctgtca
tctaaaattgaagaagctcagttccaaaatgagggcactgatgttttacaagcaatgcaa
ttcgctattaactctctacctagccgtggggatgcatctggagtgaagaggaagctggtg
ctgttctctgacgggaggtctcaaagagtcaccaatgttgtcctggagaagcgagtccgt
gaggtggcagacagcggcatcgagctctttgtcatctcaataggaaaccaagtcaacgag
gtcaatctccgcactctagtgagcagagggcgggtgcaagacatcagctacgcccagcgc
cacctgttccgtgttgctgactacccgtctctgctccgaggggtcttccaccaaacagtc
agccgcagggtgtctttgccctaa
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