Girardinichthys multiradiatus (darkedged splitfin): 124869944
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Entry
124869944 CDS
T08099
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124869944
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124869944
09142 Cell motility
04820 Cytoskeleton in muscle cells
124869944
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmu04147
]
124869944
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124869944
Exosome [BR:
gmu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124869944
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124869944
Hyaluronan
Extracellular matrix or blood plasma proteins
124869944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
YJL171C_Tos1_C
Motif
Other DBs
NCBI-GeneID:
124869944
NCBI-ProteinID:
XP_047224166
LinkDB
All DBs
Position
6:complement(11669479..11689640)
Genome browser
AA seq
1011 aa
AA seq
DB search
MLTLEAIVLCLLLGTLTNTIKAECNQRRECPIHLYFTIDTSETIALQESPPGSLVESIKM
FTEQFVQRLNDDDVRGTVKISWNIGGLHFSQTQEVFSPIQARSEFITRLRSIRYLGKGTY
IDCALRKMSEEMLQGPSNPTPLRFAVVITDGHVTGNPCGGIKVSAEDARDKGIRMFVVAA
STNIEETGLKEIANSPASVYRNDFMAVDLSQGRPIIQTATMDRIIKTIRHMAFVDCYNVS
CLETKGQPGPKGHRGQKGAKGDNGEAGLKGEKGRPGDPGIEGPIGQPGTKGEPGSKGEKG
EIGTQGKKGVAGIPGRNGTDGQKGKLGRIGAPGCKGDPGDRGPDGHPGDIGERGPSGTDG
EKGDPGRPGKAGPPGPDGDGGAQGERGSPGSPGIPGTKGLPGPPGRPGARGEEGRRGDYG
PKGDPGPDGSKGEKGEMGPEGLRGIPGEPGSNGVKGDIGLPGPRGPAGATGDTGRNGTRG
DPGDVGPRGEPGQPGPKGDPGRPGFSYPGTRGDPGERGDKGNRGHRGSRGDCGQKGQPGN
KGTPGEPGEPGPFGEPGLRGPRGEPGGDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKH
CGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSFAKDPQSETGTRVGVVQYSHSGT
FQAIQLNDHKINSLSAFKDAVKQLEWIAGGTWTPSALKFAYDNLIRDSRRAKAKVTVVVI
TDGRFDPRDDDTLLTYLCNDPNVDVSAIGIGDMFEQIEENESLQSIACQKDGRVMGMRRF
ADLVAEEFIDKIETVLCPDPVIVCPDLPCKSEPAVASCVQRPLDVIFMLDGSERMGLENH
RRAKELIENVARRLTLADGPTDDSKARLALLQFGSTGDHKEEFPLTHNLTVIVDSLAAVN
YLDSSSALGNAIIYAVNNLVIKQSQRLSRRNAEVAFVFITDGITSTDQLDEGVSAMKRVE
GVPTVIALGRDTDEEVLRNVSLGDSSAIFRGEDFSMLGKSAFFERFIRWIC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgttagaagccatcgtgctctgccttctcctcggaaccctgactaataccata
aaagcagagtgcaaccagaggagagaatgtcccatacacttgtacttcaccatagataca
tctgagaccatcgcgctccaggagtcgccccctggatcgctggtggaaagcatcaagatg
ttcacagagcagtttgtacagcgtttgaacgatgatgacgtccggggcactgttaaaatc
agctggaatattggtggactgcacttttcccagactcaggaggttttcagccctatccag
gccaggagcgagtttatcactcgtctcaggagcattcgttaccttggaaaaggcacttac
attgactgtgctctcagaaaaatgtcagaggagatgctgcaaggaccttcaaaccccaca
cccctccgtttcgcggtggtaatcactgatggccatgtaactggaaatccatgtggcggc
atcaaggtgtcggcagaggacgctcgtgataagggcatcaggatgtttgttgtggcagca
tcaacgaacattgaagagacaggactgaaggagatcgccaactccccagcgtcggtctac
aggaatgacttcatggctgtggatcttagccagggcagacctattatacagactgcgaca
atggaccgcattattaagacaataagacatatggcgtttgtagactgttacaacgtgtcc
tgtctggagacaaaaggacagcctggtccaaaaggtcacagaggacagaaaggagctaaa
ggagacaatggtgaagcaggacttaaaggagaaaaaggtcgcccaggtgaccctggcatt
gaaggtcctattggtcagcctggtaccaagggtgaaccaggttcaaaaggcgagaaggga
gagattggaactcaggggaaaaagggtgtggctggtattcctggacgtaacggaactgat
ggacaaaagggcaaattgggacggattggtgctccaggttgcaaaggagatccaggcgac
agaggtcctgacggtcaccccggagacatcggtgaacgtggtccttcaggaactgatgga
gagaagggtgaccctgggcgcccaggaaaagctggtccccctggcccagatggagatggt
ggagcacagggagagaggggaagtcctgggtcacctggcattccgggaactaaagggtta
cctggaccccctggacgtccaggagcacgaggcgaggaaggaagaagaggagactatggg
cctaaaggggatcctggaccagatggttctaagggagaaaagggtgaaatggggccagag
ggcttgagaggaattcctggagaaccaggaagcaatggtgtaaagggagacattggtttg
ccaggacctaggggaccagcaggagcaacaggggatactggaagaaatggtaccagagga
gaccctggtgatgtgggaccaagaggagagcccggacaacctggaccaaagggagaccct
ggaagacctggctttagctatcctggaaccagaggagatccaggtgaaagaggggacaag
ggcaatcgtggacaccgtggcagcagaggagactgtggtcagaagggacaacctggcaat
aaaggaaccccaggagagccaggtgaaccagggccctttggggagcctggactaagagga
ccaagaggggagcctggtggtgatggagatccaggcccagagggagatcctggacttact
gaatgtgatgttatgaactacatcagagagacatgcggctgctgtgactgtgagaaacac
tgtggagccttggatattgtctttgttattgatagctctgagtctgtgggtctcaccaac
ttcaccttggaaaagaactttgtcatcaacaccatcaatagactgggatcttttgccaaa
gaccctcagtctgaaacaggcacgagggttggtgttgtacagtacagtcacagcgggacc
ttccaagcaatccaactcaacgaccacaagatcaactcattgtcggcttttaaggacgct
gtgaaacaattagagtggattgcaggaggaacctggacgccatctgctcttaagtttgcc
tatgacaacctgatcagagacagccgcagagccaaagccaaagtaacagttgttgtcatt
acggatggacgttttgacccgagagatgacgacacactactcacatatctgtgcaacgac
cccaacgttgatgtgagtgccattggtatcggagacatgtttgagcagattgaagagaat
gagagtctgcaaagcattgcctgccagaaggatggcagagtgatgggaatgagacggttt
gcagatctcgtggcagaggagttcattgacaagattgagaccgtgctttgccctgatcct
gtcatcgtatgccccgatcttccttgtaaatcagagcctgctgtggctagctgtgtccag
aggccgttggatgtgattttcatgttggatggttctgagaggatgggcctggagaaccac
cgtagggccaaagagttaattgagaatgtggcgcgtcgcctgaccctggcagacgggccg
actgatgacagcaaggcccgtctggctctgctgcagtttggcagcacaggagaccacaaa
gaagagttccctctcacacataatctcacagtgattgtggattcactggcagctgtgaac
tacttggattcctcgtctgctttgggcaacgccatcatctatgctgtaaacaatctggtg
atcaaacagagtcaacggttatcacgacgcaatgctgaggtggcttttgtcttcatcacc
gatggaatcacctccaccgaccagctggatgagggcgtgtccgccatgaagagagttgaa
ggcgttcccactgtgatcgccttgggaagagacaccgacgaagaggtgctgcgcaacgtt
tcactgggagactcgtcggccatctttagaggcgaggacttctccatgctggggaaatct
gctttctttgagcgcttcatccgctggatttgctag
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