Girardinichthys multiradiatus (darkedged splitfin): 124870108
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Entry
124870108 CDS
T08099
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03030
DNA replication
gmu03410
Base excision repair
gmu03420
Nucleotide excision repair
gmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124870108 (lig1)
03410 Base excision repair
124870108 (lig1)
03420 Nucleotide excision repair
124870108 (lig1)
03430 Mismatch repair
124870108 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gmu03032
]
124870108 (lig1)
03400 DNA repair and recombination proteins [BR:
gmu03400
]
124870108 (lig1)
Enzymes [BR:
gmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124870108 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
124870108 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
124870108 (lig1)
DNA replication proteins [BR:
gmu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
124870108 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
124870108 (lig1)
DNA repair and recombination proteins [BR:
gmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
124870108 (lig1)
NER (nucleotide excision repair)
Other NER factors
124870108 (lig1)
MMR (mismatch excision repair)
Other MMR factors
124870108 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
124870108
NCBI-ProteinID:
XP_047224563
LinkDB
All DBs
Position
6:complement(38380469..38463394)
Genome browser
AA seq
1007 aa
AA seq
DB search
MQRSIASFFQPKSKVKDTLKKTAGEPANKPVKSPLKVQNGLQEADSPIKKVAKRSRQIVD
SDEDEAPIVKAQGDKGAPAKTKKTDDVFKAAPTPLSPTPAPSTPVTPATPSTPASSASPG
TPSTPSSISPSGIVKRKTARKMLPKRKLDESESGSESRKGESEVAEEQGQQNKRPRVESG
VSGAGNTDEPMEEGAKEEKVEKAAAEANSPDEEVENKKKEKGEKAKKKEEQVEEKISDET
EKKAEGAGKKNKAKEKTDDEKGPAIAKEEVVEKDTKDTGSPKSQMNEKKQKEAKEQKDKE
PAKKPPISSFFAPRKAGVKTDKPEKNEGEKKMSAERKNSEEEQKDTKGESTSGQTDYNPS
RPNYHPVNHACWKRGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLC
CVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSN
QRTMFQPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGK
LRIGLAEQSVLSALSQAVCLTPPGQGFPPAVVDAGKGMSAESRRAWIEEKSLILKQTYCE
MPNYDVIIPVLLKEGIDELPKHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTCEYKY
DGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRVPKVKKDSVVSCVLDTEAVAWDREK
KQIQPFQVLTTRKRKDVEASEIKVQVCVYAFDLLYLNGESLVRQPLCRRQELLKESFTEV
EGEFLFARSINSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDY
LDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHY
KFLKEHILPKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGIS
LRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcattttttcagcccaagagcaaggttaaggacaccctgaag
aaaactgcaggtgaaccagcgaacaagcctgtcaagagccccctgaaggtgcagaacggc
cttcaggaagccgattcgcctattaagaaggtcgccaagcgcagccgtcaaatcgtggac
agtgatgaagacgaggcgccaattgtaaaagcacaaggcgacaaaggagctcctgctaaa
accaagaagacggacgatgtgttcaaggctgctcccaccccattgtctcccacgccagcc
ccatccacacctgtaacccccgcaactccatccactccagcctcttctgcttctccaggg
acgcccagcactcccagttccatctccccatctggaattgtgaaacgcaaaactgcgagg
aagatgctccccaagaggaagctggatgagagcgagagcggcagcgagagtcggaaaggg
gagtcggaggttgcggaggagcagggtcagcaaaacaaacgaccccgtgtggaaagcggt
gtcagcggcgcagggaacaccgatgaacccatggaggagggagcaaaggaagaaaaggtt
gaaaaggcagcggctgaggctaacagcccagacgaggaggtggagaacaagaagaaagaa
aaaggagagaaggccaagaagaaggaggagcaggtagaagaaaagatctctgatgagaca
gaaaagaaagctgagggggcgggaaagaaaaataaagcaaaggagaagacagatgatgag
aaagggcctgccatcgccaaagaggaggtggttgaaaaggacacgaaagacacagggagc
ccaaaaagtcaaatgaatgaaaaaaagcagaaagaggcaaaggagcagaaagataaggag
ccagccaagaaacccccaatcagcagtttctttgctcccaggaaagctggagttaagaca
gataaaccagagaagaatgaaggagagaaaaagatgagtgcagagagaaagaactctgag
gaggaacagaaagacaccaaaggggaatcaacctcaggacagacagactacaatccatcc
agaccaaactaccacccagtgaaccacgcctgctggaaacgaggccaaaaagtgccgtac
ttggcagtggctcgcacctttgagaaaatagaagaagactctggcaggctgagaaacatt
gagacgctgtcaaacctgcttcgctcggtgcttctgctctctccagatgacctgctgtgc
tgtgtgtacctgtgtttgaaccagcttggccctgcctacctcgggatggagctcggtgtc
ggggagactgtgctgatgaaagctgtcgctcaagcaactgggcgacatttggacaaaatt
aaagcggaggcacaggagaaaggagatttgggcctcgtggctgagagttcccgtagcaac
cagcgcaccatgttccagccggccagtctgacagcaggaggcgtgtttaagaaattgaag
gaaattgccagtatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggc
ctctttgtggcgtgccgcttttccgaagcccgctacatagtcaggtccctggctgggaag
ctgaggattggtcttgctgagcagagtgtcctctccgccctgagccaggctgtctgcttg
accccacctggacaaggtttccctcctgctgtggttgatgcagggaagggcatgagtgct
gagagcaggcgggcctggatcgaagagaagagcctcattctgaaacagacttactgcgag
atgccaaattacgacgtcatcatccccgttttgctaaaagaaggcatcgacgagctgccc
aaacactgcaagcttactccaggagtaccgctaaggcccatgttggctcaccccaccaag
ggtgtcggcgaggtgatgaagaagttcgatgaagctgcattcacgtgcgagtacaaatat
gacggagagcgtgcacaaattcacattctggagagcggggaagttcgaattttcagccgc
aaccaggaagacaacaccagcaaatacccagatatcatctcacgcgtccccaaggtaaag
aaggactctgtagtgtcctgtgttctggacactgaggcggttgcctgggatcgagagaag
aagcagatccaacccttccaagtcctcaccactcgtaagagaaaggatgtggaagcctct
gagatcaaagtccaagtttgcgtgtatgcctttgacctcctctatctcaacggagagtcc
ctggttcgacagccgctgtgccggcgtcaggagctgctgaaagagagcttcacagaggtg
gagggagagtttctgttcgcccgttccatcaactcgcacgacactgatgccatcgcagag
ttcctggagcagtctgtccgagactcctgcgagggcctgatggtgaagactctggagaag
gatgcaacgtatgagattgccaagcgctcccacaattggctcaagttgaagaaggattac
ctggacggggtgggtgacacggtggacctctgcgtgattggtgcctacctcggaaaagga
aaaagaacaggaacgtacggtggctttctgctggcctgctacgatgaagacaatgaagag
tttcaatcagtctgcaagatcggaacaggctttaaggatgaagatctggagcaacattac
aagtttttaaaggagcacatcctgccgaaaccacgtccctactaccgcgtagaccaatca
gctgagcctgacgtgtggctggacgccgtgcaggtgtgggaggtgaagtgcgccgacctc
tcgctgtcccccgtctacaaggctgccatgggaatggtggatgcagagaagggcatttct
ctgcggttccctcgtttccttcggatcagagacgacaagaagcctgaggacgccactacc
ggagctcagatcgctgatttgtataagaagcagcagcagattcagaatcaaggggagaaa
gctgacccggaggactactactga
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