Girardinichthys multiradiatus (darkedged splitfin): 124870398
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Entry
124870398 CDS
T08099
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124870398 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124870398 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124870398 (tnr)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124870398 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Ig_DSCAM-DSCAML_C
EGF_Tenascin
Pur_ac_phosph_N
EGF_2
FN3_Tor_3rd
Fn3_Dep-1_2nd
DUF4998
EGF_integrin
Motif
Other DBs
NCBI-GeneID:
124870398
NCBI-ProteinID:
XP_047225010
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All DBs
Position
6:complement(22983464..23269376)
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AA seq
1382 aa
AA seq
DB search
MPQLKQLHWATEITAILALALLFALQGAAHAAPSGDNKLVRTTRVRRQIPEGDQFPSASS
VNQTLQEQPLVFNHVYNINVPMESLCSVDLDASVAQAPDSHAELGSRPPVEGPVEPSGPT
EYTEQTFDAESQVTFTHRINIPKAACSCPAISTIQQLATRVEMLEREVSTLRAQCGSGCC
GEGSAMGHLDFIPSCSSHGSFSFDLCGCICEEGWSGKNCSEPRCPNDCSGQGVCIEGECV
CDRDFGGDNCSEPRCPLDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGLCVNGT
CQCRPGYVGEDCSLVYCANNCSKKGVCKEGFCVCQDGFAGDDCNSVAPAMNLNTRGVTDR
TIELEWEGSVRVTDFLVTYTPTSPGGVQLEIRLPGNTTSWIITSLEAGIEYNINVFAVIN
NSISVPSSITVWTYFTNPDGLVFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTA
QLPSTITSFVQTGLRPGEEYTVNLVALRDQGRSQPVTATFTTLIDGPTQLIVRDVSDSVA
FVEWTPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLTQYSLQVLRPGSQYEVSVSGVRKG
NESGSISTEFTTALSFFSEIDAPKNLRLVSKTSTTLELEWDNTEAEVEGYQVVYSTLAGD
QYDKVIVPCNKGATTKTNLTDLLPGTEYGIGISAMKGINQSTPATMNARTGLDAPRRLTV
TASTDNSITLVWDVVQGPIDHYRVTFTSSSGITTELMVPKDITTTTLTDLEPGSEYTITV
AARRGRQQSTATTIYSFTGIRPVTHLYLSEGTSDSVLVAWSAPAPPADLFILSYSSADGT
DTSKVTLDGSKTWSLVQDLLPSTHYMFSLITIQGDVSSEPITASLITEMDPPKELAVSDV
TEDAVTISWIKPLAHFEYYKLAYQSARGQVNSEMIDRDVTNYTLSSLFPATEYEICLNTV
RGGEESKPVSTSVFTAMDMPAELTALNITPQGALLRWNAPQSNVDNYVLTITHNQLTADT
FLVEGNKHEHQLSSLKPSTTYSVALYATKGPLTSGTVITNIQTPMDAPVNLTASEVNHRS
ALISWQPPAAEIDNYMLTYKTPDGSRKELILDAEDTWIRLEGLAESTEYTVKLQAARGLD
TSAVVSTTFTTGSRLFSTPQNCAQHLLNGETVSGVYTIYINRDPSQGVQVYCDMTTDEGG
WIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQKIASQGRYELRIDMRDGQES
VFANYDKFSIGDARNLYKLRIGEYNGTAGDSFSYHQGRPFSTKDRDNDIAVTNCAMSYKG
AWWYKNCHRANLNGKYGESSHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKRRRST
PV
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgccacaattaaagcagcttcattgggccacagagatcacagcaatcctggcactggct
ctgctttttgcactacagggtgctgcacatgctgctccatcaggagacaacaagctggtt
cgaaccaccagagtgagaaggcagatcccagagggggatcagttcccctctgcttcctca
gtcaaccagacgctgcaagagcagcctcttgtctttaaccatgtgtacaacattaacgtg
cccatggagtctctgtgctccgttgacctggatgcatctgtggcccaagccccagattct
catgccgagttgggatccagacctcctgttgagggtccagtggagccatctgggccaaca
gaatacactgagcagacgtttgatgcggagagtcaggtgacgtttactcaccgcatcaat
ataccaaaagcagcatgcagttgtccagcaataagcacaatccagcagctggccaccaga
gtggagatgctggagagagaagtatccacgctcagagctcagtgtgggtctggatgctgt
ggggaaggctctgccatgggtcatttggactttatccccagctgcagcagccatggaagc
ttcagctttgatctgtgtggctgcatctgcgaggaaggttggagcggtaaaaactgctcc
gagcctcgctgcccaaatgactgctctggtcagggggtgtgtatcgaaggggagtgtgtg
tgtgatcgtgactttggaggtgacaactgttcagagccacggtgccctttggactgctca
ggcaggggcctgtgtattgatggggagtgtgtgtgcgaggagtccttcacaggcgaagac
tgcatggttggacggtgtctcaatgactgctcggatcaggggttgtgtgtcaatgggaca
tgccagtgccggcccggctatgtgggagaagactgctcattggtctactgcgccaacaac
tgcagcaagaagggagtctgtaaggaggggttctgtgtctgccaggatggcttcgctgga
gatgattgtaactcagtggcacctgccatgaatttgaatacacgaggagttacagatcgt
actattgagctggagtgggaagggtctgtaagggtgacagatttcttagtgacgtacaca
ccaaccagccctggaggtgtgcaactagaaataaggctgccaggaaacacaacatcttgg
attatcacaagtcttgaagcaggcatagagtacaacatcaatgtgtttgctgtcatcaac
aactcaatcagcgttccctccagtattactgtttggacgtattttaccaacccagatgga
ttagtctttaaatccatcacagagacgtcagtggaggtccaatggcaaccgttttactat
tcctttgatggatgggagatcagcttcatccccaaggacaatgatggcggaatgacagcc
cagcttcccagcaccattacctcatttgttcagactggtctgaggcctggggaggagtat
acagtcaacctggtggcactcagagatcagggtcgaagccagccagtcactgctaccttc
acaaccttgattgatggtccgactcagctgattgtacgtgatgtgtcagactctgtagct
tttgtggagtggacaccaccaaaagcaaagattgatcagattgtgttgcgttatggccta
gtggggggagagggcccacggactacctttcggctccagcccacccttacccagtactca
ttgcaggttctgcgtcctggctcgcagtatgaggtgtcggtaagcggagtaaggaaaggg
aatgaaagcggatctatctccactgaattcacaaccgctttatcgttcttctcagagatc
gatgcccccaagaacttacggcttgtgtccaagacctccactaccctcgagcttgaatgg
gataacactgaggctgaggtggagggttatcaggtagtgtacagcactttagctggagat
cagtacgataaggtgattgtgccatgcaacaagggtgccaccactaagactaatcttaca
gaccttctgccaggcacagagtacggaattggcatctctgctatgaagggtatcaaccag
agtacaccggcaacgatgaatgccaggacaggtctggatgcacccaggcgtttaactgtg
acagcttctactgacaactccatcactctggtgtgggatgtagtccagggtccaatcgac
cactacagggtcaccttcacatcttcttctggcatcactactgagctgatggtgcctaaa
gacataaccaccacaactctgacagaccttgagcctggaagtgaatataccatcacagta
gctgcaagaagagggaggcaacagagcactgcaacaaccatatattccttcacagggatc
aggcctgtaacccacctttacctgtcagaagggacatcagattcagtgttggttgcatgg
agtgccccggcaccacccgccgacctcttcattctgagctacagctctgccgatgggact
gacacctctaaggtgacactggatggctccaagacgtggtcactggtccaggacctgctg
ccatccactcactacatgttcagtttaatcacaatacaaggggacgtttcctctgagccc
attacagcatcgctcatcacagaaatggacccaccaaaggagctggcagtgtcagatgtg
actgaagatgcagtgacaatctcttggataaaaccactggctcactttgaatattataag
ctcgcctaccagtcagctagaggtcaagtgaacagcgagatgatcgacagagatgtgaca
aactacactttgtctagtctgtttcctgccacagagtacgagatctgcctgaatactgtc
agagggggagaggagagcaaacctgtcagcacgtccgtcttcacagctatggacatgcct
gcggagctgacagccctcaacatcactccacaaggagccctgctgaggtggaatgctccc
cagtccaacgtggacaactacgtgctgaccatcacacataaccagctgacagcggatact
ttcctggttgaaggaaacaagcatgagcaccagttgtccagcctcaagccaagcaccacc
tactctgtggccctgtatgccaccaaaggacccctcacaagtggcactgtcatcaccaac
attcaaacacccatggatgcacctgtgaacctgacagccagtgaagtgaaccaccgcagc
gctctcatttcctggcagccaccagccgcagaaatcgacaactacatgctcacttacaag
actcctgatggcagccgtaaagagctgattcttgatgcagaggacacatggattcgactg
gagggattggcagagagcacagagtacacggttaagctccaggctgctagaggacttgat
accagtgctgtggtttccaccacctttactacagggagccgtctgttttcaacacctcag
aactgtgcccaacacctgctgaatggggagactgtgagtggcgtctacacaatttacatc
aacagagatccgagccaaggggtgcaggtgtactgtgacatgaccacagatgaaggaggt
tggattgtattccagcgtcgtcaaaatggtcttactgacttttccagaaagtggagtgac
tatcgggttggatttggaaatcttgaggatgagttttggcttggtcttgataacatccag
aagattgcttctcagggccgctatgagctgagaattgacatgagagatggacaagaatca
gtttttgccaattatgacaaattttctattggagatgcaagaaacctctacaagctcagg
ataggagaatataatggcactgctggtgactctttcagctaccaccagggccgaccattc
tcaactaaagacagagacaatgacattgctgtcactaactgtgccatgtcctacaaagga
gcctggtggtacaagaactgccaccgggccaacctcaatggaaaatacggcgagtccagt
catagtcagggtattaactggtaccactggaaaggccatgagttctccattccctttgtg
gagatgaagatgaggcccttcaacttccgtagcatcagcagtaagaggagacgatccacc
cctgtataa
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