KEGG   Girardinichthys multiradiatus (darkedged splitfin): 124870541
Entry
124870541         CDS       T08099                                 
Name
(RefSeq) RNA-binding protein MEX3B
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
gmu  Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:gmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmu03019]
    124870541
   04121 Ubiquitin system [BR:gmu04121]
    124870541
Enzymes [BR:gmu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124870541
Messenger RNA biogenesis [BR:gmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     124870541
Ubiquitin system [BR:gmu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124870541
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-RING_2 KH_BICC1_1st zf-C3HC4 KH_2 RING_XB3-XBAT31 KH_DEAH11_2nd Mito_fiss_reg Prok-RING_4 zf-RING_5
Other DBs
NCBI-GeneID: 124870541
NCBI-ProteinID: XP_047225249
LinkDB
Position
6:complement(19382501..19391270)
AA seq 653 aa
MPSPLFHPEIMDHDVVISSQHSGVALPREADQESRDEDHQEVLRFALDQLSLMAMDKVDC
VGGGGGNGLVDTLDGTQGPVSESCNGVVGYVDLQMLEHPSGSRDSPTSCSPSPEYYGSGG
YHMAGSHSMLHGEQSSVLCNRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTY
IKTPVRGEDPVFIVTGRREDVEMAKREIVSAAEHFSMIRASRCKAGGPGGGGSLPGPPHL
PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREKDPVFEVTGMPENVDRA
REEIETHITLRTGTFVDLQGDNDFHTNGTDVSLEGLGSLSGGLGASLWSRATGHHSAPPP
PPPPPPSPPPSLPMSMHHSSSRKMSSSVAYHTHNSGMSSDSFSSNRKANEGGSPTSPFST
GSSSAGGGFTFGGDSTPGLTSSDELGFEFSASNIWAPFINGGAGNKTSASSQQQPLRRNS
SGLSGGAITPRLSPTLPQDTGVGPLDHPLARRAQSDPLSTLSWLQSGSTGGGSFSGASSS
SSGGSSTGYSSCSASSLPGGSPTDSEGGGSGVGITPGILSRLKGSSGVAALVGVGPGVNR
DCFVCFESEVTAALVPCGHNLFCMECAGQICQSAEPECPVCHTPTTQCIRIFS
NT seq 1962 nt   +upstreamnt  +downstreamnt
atgcctagccctttattccaccccgagataatggaccacgacgtggtgatcagcagccag
cacagtggcgtggctcttccccgggaggcggaccaggagtcccgggatgaggaccaccaa
gaggttctacgattcgcactggaccagctgtcactcatggccatggataaagttgactgt
gtgggcggaggtggaggcaacgggcttgtggacactctggatgggacccagggtccggtc
tccgagagctgcaatggtgttgtgggctacgtggatctacagatgctggagcatcccagc
gggtcccgggactcgccgacgtcctgctctccatccccggagtactacggctcgggcggg
taccacatggccgggtctcactccatgctccacggggaacaaagctccgtcctctgcaac
aggaaaagaagcgtgaacatgactgaatgtgtgcctgtccccagctccgagcatgtcgct
gaaatagtggggagacaaggttgtaagatcaaggccctgcgtgccaaaacaaacacctac
ataaagactccagtcagaggtgaggatccggtcttcatcgtgacagggcgtagggaggat
gtggaaatggccaagcgtgaaattgtatctgcagccgagcatttctccatgatccgggcg
tctcgctgcaaagctggaggcccaggaggaggaggctctctgcctggcccacctcaccta
ccgggacagaccaccatacaggtgagggttccctacagagtggtcggtttagtcgtgggg
ccgaagggagctaccatcaagcgcatccagcagcagactcacacctacatcgtcaccccc
agtcgagagaaggaccccgtctttgaggtgactggaatgccggagaatgtggacagagcg
agagaggaaatagagacccacataaccctccgaactggaacctttgtagacctacaggga
gacaatgacttccacaccaacggcactgacgtcagtctagaaggcctcggctccctgagt
ggagggctcggagcatctctctggtccagagctacaggccaccactccgcccctccacct
ccaccacctcctcctccttccccaccaccatctcttcccatgtccatgcaccactcctcc
agcaggaagatgtcctcctcggtcgcgtatcacacccacaacagcgggatgagctcagac
agcttcagctccaacagaaaggccaacgaggggggcagccccaccagtcctttcagcaca
ggttccagcagcgctggaggcggtttcacgtttggaggtgactcgaccccgggacttacc
tcctcagatgaattgggcttcgagttcagtgcttccaacatctgggcgcctttcatcaat
ggtggagcagggaataagacctctgcgtcttctcaacagcagcccctgcggcgcaacagc
agcggcctcagtggcggtgccatcactccacgattgtctccgactctgcctcaggacacg
ggtgtgggccccctggaccacccactggcccgtcgcgcccaaagcgaccctctcagcact
ctgtcctggctgcagtccggcagcacgggcggcggctccttctcgggcgcctccagttcc
agctccggtggctcatcaactggctactcctcttgctcggcctcttccctgcccggcggt
tcgcccactgactctgagggaggcggcagcggtgtagggatcacccctgggatactcagc
cgtctcaaaggcagctctggggtcgcagctctggtcggtgtcggccccggggtcaacagg
gactgctttgtgtgtttcgagagcgaggtgacagcagcccttgtaccttgtggccacaac
ctgttctgcatggagtgcgccgggcaaatctgccagtcggccgaacccgaatgccccgtc
tgtcacactcccaccacacagtgcatccgcatcttctcctaa

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