Girardinichthys multiradiatus (darkedged splitfin): 124871003
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Entry
124871003 CDS
T08099
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124871003
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124871003
09142 Cell motility
04820 Cytoskeleton in muscle cells
124871003
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmu04147
]
124871003
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124871003
Exosome [BR:
gmu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124871003
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124871003
Hyaluronan
Extracellular matrix or blood plasma proteins
124871003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
124871003
NCBI-ProteinID:
XP_047225875
LinkDB
All DBs
Position
7:30862005..30882368
Genome browser
AA seq
1049 aa
AA seq
DB search
MTGNHPLAPMISWVIILTVFQAAAPQRASPRGPRPIPGRGDSQGPTPTLLPPEPTPRPEG
CETTIIDCPIKLFFTIDTSETIALQEPPPGSLVESIKEFMKIFAQKLEDEEYRGQIQITW
SFGGLHFSQKQVVFSQFTTRQSFIRNLSQIKYLGKGTYIDCALRNMTHQMTYHYSGTKAV
LFSVVITDGHVTGSPCAGIKAAADKARDQGIHIFSVAASSSIDEQGMNEIASSPIEVYRD
NYIVMEIIDGRPRMNTDTIDQIIKVMKYQAYLQCYKPTCLAVPGNPGRKGPSGPKGGKGD
RGKTGQKGDKGNQGDPGIEGSIGQPGLKGEIGFKGEKGEVGLIGAKGVAGSPGRNGTDGQ
KGKIGRIGAPGCKGEPGDKGPDGHPGDAGDSGSSGEKGEKGDTGLPGKPGPPGPVGSQGP
KGENGNLGNPGPPGVRGDPGLIGRPGPKGELGRRGDPGLKGTPGPDGVKGAKGDRGPPGD
RGRPGEDGFKGAKGGQGLPGPRGRSGEPGSAGGNGTVGTPGDPGSRGDPGPPGPQGDNGR
PGFSYPGSRGPTGDRGDPGRRGPRGARGECGAKGKPGDKGVPGEPGEPGQPGEPGERGSR
GGPGQNGDPGPAGDPGLTDCDVMTYIRETCGCCDCEKQCGALDIVFVIDSSESVGLTNFT
LEKNFVINTINKLGSMASDPTSPTGTRVGVVQFSHDGTFEAIRLDDASINSMSSFKTAVK
KLQWIAGGTFTPSALKFTYDNLIRDSKRARAKVSVVVVTDGRFDPRDDDSQLRYLCDDPA
VVVNAIGVGDMFDKKHDSETLVSIACNNKNRITEMKQYTDLVADNFIEKMETVLCPDPVI
KCPDLPCKTELDVAPCVGRPVDLVFLLDGSERLGMENFGHARHFVQMVANALTMAKTRND
LNGARLALIEFGKENENQVAFLLTHELNGIASGLSGLSYLDSSSAVGPAIFKTINEILGK
GSTRKTRRDAEVSFVFITDGITDTTNLDEAANAMRREQIVSTVISTGSDADEEVLIKLAM
GDQNAIFKGQRFSDVLQPSLFNRFIRWVC
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgactggaaaccatccactcgccccaatgatttcatgggtcatcattctgactgtgttc
caagctgcagcgcctcaacgtgcatcccctcgaggacccagaccaatacctgggcgaggt
gacagtcagggaccaacaccaaccctgctgccacctgagcccacaccaagaccagaaggt
tgtgagacaacgatcatcgactgccccatcaagctgtttttcaccattgacacctcagag
accattgccctgcaggagcctccccctggcagtctggtggagagcatcaaggagttcatg
aagatattcgcccagaaacttgaagatgaggagtacaggggccagatccagatcacttgg
tcttttgggggcttgcacttctctcagaagcaggtggtcttcagtcagttcacgaccaga
cagagcttcatcaggaatcttagtcagatcaaatacctgggcaaaggcacttacattgac
tgcgccctcagaaatatgacccaccagatgacataccactactcagggacaaaagctgtc
ctcttctccgtggtcatcacagatggtcatgtgacagggagtccgtgtgcagggatcaag
gcggcagcagacaaggctcgggatcaggggatccatattttttcagtagcagcctccagt
agcatcgatgaacaagggatgaatgagatagccagctcgcctattgaggtgtatcgggac
aattacatagtcatggaaattattgatggaagaccaagaatgaacactgacacgattgat
cagatcatcaaagtcatgaaatatcaagcctatctacagtgctataaacctacatgcctg
gcggttcctggtaaccccggacgaaaaggaccctcgggtccaaaaggtgggaaaggtgac
agaggcaagacaggacaaaaaggtgataaaggtaaccagggtgatcctgggattgaaggt
tcaattggacaacctggtctaaagggagaaattggttttaaaggtgaaaagggtgaagtt
ggattaattggagcaaagggcgtggcgggttcaccaggaaggaacggaacagatggacaa
aagggtaaaatcggccgaattggagctcctggctgcaaaggtgaaccaggtgacaaggga
ccagatggacacccaggcgatgctggtgactctggatcatctggagaaaaaggagaaaag
ggggacacaggtctccctggaaagccaggcccccctggccctgtgggtagtcaaggacca
aagggtgaaaatggaaatcttggaaatccaggaccacctggagtaagaggggatcctggg
ctcattggcagaccaggaccaaagggcgaactgggtaggagaggagatcctggattgaag
gggacaccaggacctgatggggtcaaaggagcaaagggagatcgaggaccaccaggggac
agaggtcgaccaggggaggatggatttaagggtgctaagggaggccaaggactaccagga
ccaagaggtcggtcaggagaaccaggcagcgctggaggaaatggcactgtgggaactcct
ggagaccctggatcaaggggagaccctggaccacctggaccacaaggagacaatggaaga
ccaggattcagttacccaggatcaagaggaccaacaggagacagaggggatccgggcagg
agaggacccagaggggccagaggtgaatgcggagccaaaggcaagcctggagataaagga
gtgccaggagagcctggggaaccaggccagccaggagagccaggagagagaggatcccga
ggagggcctggacaaaatggggatccaggaccagctggggatcctgggctcactgactgt
gatgttatgacgtacatcagggagacatgtggttgttgtgactgtgagaagcaatgtgga
gctctggacattgtctttgtaatcgacagctctgagagtgttgggctgaccaacttcacc
ctggaaaagaactttgttatcaacaccatcaacaagctgggatccatggcctctgacccc
acatcaccaactggtacaagagttggagttgtgcagttcagccatgatggaacctttgaa
gccatacgtctcgatgacgcgtccataaactccatgtcttcatttaagacagcagtgaag
aaactacagtggattgctgggggcacatttacaccctctgcactcaagtttacctacgat
aacctgatcagggacagcaagagagcccgtgctaaggtatctgttgtggtggttacagac
ggtcgctttgacccccgtgatgacgacagtcagctcaggtacctctgcgatgaccccgct
gtagtggtgaatgccattggggttggtgacatgtttgacaagaaacatgacagcgagacc
ctagtgtcgatagcctgcaataataagaaccgaatcactgagatgaagcaatacacagat
ttggtcgctgataacttcattgagaagatggaaacagttctctgtcctgatccggtgatt
aagtgtccagaccttccctgtaaaactgaacttgatgtagctccatgcgttggacgacct
gtagacctggtgtttcttcttgatggctcagagcgcctcgggatggaaaactttggccat
gcccgtcatttcgttcagatggtggcaaatgctttgacaatggccaagaccagaaatgac
ctaaacggggctcgcctggcactcatagagtttggcaaggagaatgaaaaccaagtggcc
tttcttcttacacatgagctgaatggtattgcttcaggtctatcagggttaagttatctt
gattcttcatcagcagtggggcctgccatttttaaaaccatcaatgagatcttgggtaaa
ggaagcactcgcaaaaccagacgtgacgctgaggtttcatttgttttcatcacagatggc
atcactgacaccaccaacctggacgaggcagctaatgcaatgcgcagggaacagattgtt
tccactgtgatttccacaggaagtgatgcggatgaagaagtcctaataaagttggctatg
ggtgaccagaatgccatctttaagggacagagattttctgatgtgttacagcctagtttg
tttaaccgtttcatccggtgggtgtgttag
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