Girardinichthys multiradiatus (darkedged splitfin): 124871264
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Entry
124871264 CDS
T08099
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124871264 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmu03041
]
124871264 (sf3b1)
03036 Chromosome and associated proteins [BR:
gmu03036
]
124871264 (sf3b1)
Spliceosome [BR:
gmu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124871264 (sf3b1)
Complex B
124871264 (sf3b1)
Complex C
U2 SnRNP specific factors
124871264 (sf3b1)
Chromosome and associated proteins [BR:
gmu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
124871264 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
124871264
NCBI-ProteinID:
XP_047226391
LinkDB
All DBs
Position
7:5756714..5772264
Genome browser
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLQEENGEQGVGLVSTGFYDQEIYGGSDSRFDGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNSIPQSDEPYDPFAEHRPQKIADREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMMEQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAKRKRRWDQTADQTPSNATPKKLSSWDQADSAAETPGHTPGHTPS
NSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTDRETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcccagatcctggagatccagggg
atgaaggccaccctgcaggaggagaatggtgagcagggagtgggcctggtctccactggc
ttttatgatcaggagatctatggaggcagtgacagccgttttgatggatatgtaacttca
attgcagccaatgaacaagaggatgatgatgaagacgatacgtctacaagcttattggga
cagaagaaacctggctaccacgcaccagtcgcaatactcaattccatccctcagtcagat
gagccgtacgacccatttgcagaacatcgtccgcagaagatcgcagatcgggaggacgaa
tacaaagcccgtcgcagacagatgatcatctcgcctgagcgtcttgacccttttgctgac
gggggcaaaacaccggaccctaagctgcaggtcaggtcgtatgtggacgtgatgatggaa
cagaacctgtccaaagaggagagggagattcgtctgcagctggcagagaaggccaaatca
ggggatctgaaagctgtcaatgggtctgctgcctcccaagccgctgcgaaacgtaagcgc
cgctgggaccagacagctgaccaaactccatccaacgccacacccaaaaaactgtccagc
tgggaccaagcagattctgctgctgagaccccaggacacactcctggacacacaccttct
aacagccgctgggatgaaactcctggtcgtcctaaaggcagcgagaccccaggggccacc
ccaagcactcgtatgtgggaccctactcccagccacaccccggctggtgctgccacccct
ggcagggacacacccggccatgccacgcctggtcacggcggtgccacgggaagtgtccgc
aagaaccgctgggacgaaaccccaaagacagacagggaaactccaggacatgggagcggc
tgggctgagactccacgtacagacagaggagaggagtctgtgggtgagactccaacccca
ggagccagtaagaggaagtctcggtgggatgaaacacccgccagccaaatgggatcctcc
acaccattgctgacccctggaaaaactccattaggaacaccagccatgaacatggccaca
cctacacctggtcacctgatgagcatgaccccggagcagctccaggcatggagatgggag
agggagattgatgagaggaaccggcctctcacagatgacgagcttgacgctatgttccct
gaaggctacaaggttttgcctcctccagcagggtacgtcccaatccgtactccagcccgt
aaactgtcagccacacccacacctatcggagggatgacaggtttccacatgcaggcagag
gaccggaccaccaaacagatgaatgatcagccctcaggaaacctccccttcctcaaacct
gacgacattcagtactttgacaaactgctggttgaggtggatgaatcaactctgagtcca
gaggaacagaaggaaaggaagattatgaaactgttgctgaagattaaaaatggaacacca
cccatgaggaaggctgctctgcgccagataactgacaaagctcgagaatttggagcgggt
ccgctgttcaaccagattctgcctctgctcatgtcccccaccctggaagaccaagagcgc
catctcctggtcaaagtcatcgaccgcatcctgtacaaactggacgacctggtccggcca
tacgtacacaagatcctggtggtgattgagccgctgctgattgatgaggactattacgcc
agagttgaaggcagagaaatcatctctaacttggcaaaggctgccgggttggccacgatg
atctctacaatgcgacctgacattgacaacatggatgagtacgtcagaaacacaacagct
cgagccttcgctgtggtggcctctgctctaggcattccctccctccttcccttcctcaaa
gctgtgtgtaaaagcaagaagtcgtggcaggcccggcacaccggcatcaagatcgtccag
cagatcgccatcctcatgggctgcgccatcctgcctcacctgcgcagcttggtggagatt
attgaacacggtctggtggatgaacagcagaaggtgaggaccattagtgccctggctata
gctgccctggctgaagctgctacaccctacggtatcgagtcctttgactcggtgctgaag
ccactgtggaagggcatcaggcagcacagaggaaagggtctggctgcctttctcaaagct
attggttatctaatccccctgatggacgccgaatacgcaaactactacaccagagaagtg
atgttgatcctcatcagagagttccagtcccccgacgaggagatgaaaaagattgtactt
aaggtggtgaagcagtgttgtggcaccgatggtgtggaagcaaactacatcaaaactgag
atcctgcctcccttcttcaagcacttctggcagcacaggatggcgctggacagacgcaac
tacagacagttggtggacaccactgttgaacttgctaacaaagtgggagcagcagagatt
atttcccgcattgttgatgacttgaaagatgaggcagagcaatacagaaagatggtgatg
gagaccattgagaagatcatggggaacctgggagctgctgacattgatcacaagctggag
gagcagctgatcgatggtattctgtacgcctttcaggagcagactactgaggattctgta
atgttgaatggtttcggaacggttgtgaacgcactagggaagcgtgtgaaaccgtacctg
cctcagatctgcggtacggtactgtggcgtctcaacaacaagtcggccaaagtccgtcag
caggcagcagatctcatctctcgtacagcagtggtgatgaaaacctgtcaggaggagaag
ctgatgggccacttgggtgtggtactttacgagtacctgggagaggagtaccctgaggtg
ctgggcagcatcctgggggcgctgaaggccattgttaatgttataggtatgcacaagatg
actccacctatcaaagacctgcttccccgcttgacacccatcttgaagaacagacacgag
aaggttcaggagaactgcatcgacctggtgggcaggattgctgataggggagctgagtat
gtgtcggccagagagtggatgaggatttgttttgaattgctggagctcctcaaagctcac
aaaaaggccatccgcagagctactgtcaacacttttggttatattgccaaagccatcggg
cctcatgatgtgttggccactctgctgaacaacctgaaggtccaggagcgtcagaaccga
gtttgtacgaccgtggccattgccatcgtggctgagacctgttcaccttttacagtgctg
ccggcactcatgaacgaatacagagtgcccgagcttaatgtacagaatggtgtcctaaag
tcgctctcctttctgttcgagtacattggagaaatgggaaaagactacatctatgctgtc
acacctctgctggaggatgcactgatggacagggacctggtccacagacagactgccagt
gcagtagtccagcacatgtctctgggtgtctatggttttggctgcgaggattcacttaac
catttattaaactatgtgtggcccaacgtttttgagacgtctccccatgttatccaggct
gtcatgggcgccctggaggggctgagagtggcccttgggccctgccgcatgctgcagtac
tgcttacagggtctgttccacccggcgcgcaaggtgagggatgtctactggaagatttac
aactccatctatattggctcccaagacgcccttattgctcattacccacaggtctacaac
gatgagaaaaacgtctacgtccgctatgagctcgaatatgttttgtaa
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