Girardinichthys multiradiatus (darkedged splitfin): 124871290
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Entry
124871290 CDS
T08099
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmu04147
]
124871290 (col18a1a)
00535 Proteoglycans [BR:
gmu00535
]
124871290 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124871290 (col18a1a)
Exosome [BR:
gmu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124871290 (col18a1a)
Proteoglycans [BR:
gmu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124871290 (col18a1a)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124871290 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
124871290
NCBI-ProteinID:
XP_047226446
LinkDB
All DBs
Position
7:46293436..46398352
Genome browser
AA seq
1371 aa
AA seq
DB search
MRTWFKILSLLTLCVVYSKAWFWSWSGTGTTLAPWLELEGSGSVADSGEPPSESSTTVGT
EIIDEGNVIQKVGQTWDETTEGPQLTTVIPSTQPERRHGAEKATAGMSSHRSKPENNGVS
LLQLIGDPPPDIFPEVDGPENSPAYLFGPDSTTGQLARAHLPSPFYRNFALIFNLKPTSD
DGGIIFSITDSSQQVIHVGVKLSDVQGTEQNVIFYYSEPGAKQSYEAARFRVPSMKDTWN
RFAVAVEDDKVMFYLNCDAEHQVMRIERSPDEMKLEAGAGVFVGQAGGEHPEKFQGAISE
LRVVGDPRAAERLCEEDDDSDMASGEGSGYEETRRPKPYTEKQQSTTTFVSSPPIPQPPL
DRKGEEGTFRETGAVVAKGQKGDRGDKGEKGDRGPMGPKGEMDSSSSSQGGIREHKGEPG
DKGAKGNAGFGYPGKKGEPGPQGPPGPPGPPGPTSEYSVGSDGSVVSKVPGPRGPSGSPG
PQGPPGEDGEPGDPGEDGKTGPQGPPGFPGTPGDPGLKGEKGDRGEGHPGPRGPPGPPGT
GFRSTFEDMEASGFPDLESIRGLPGPPGPPGPPGLPGPSSASTAVSSGAFGPPGKDGVPG
QPGLPGLPGADGLPGAPGPRGEKGDSGELGLPGAIGEKGAQGEPGLPGPAGEPGLAGLPG
PMGPVGRPGPPGPPGPGHRVGFDDMEDSSGIFTNGLPGIRGPEGIQGPPGLPGHPGRPGL
AGTQGPKGEQGPQGRDGQPGLDGFPGPPGQKGHKGDKGETGEAGRDGTGLPGPPGPPGPP
GQIIYQPSDNGAAGLPGRAGFPGPAGPKGDRGDPGPPGYGLKGEKGAPGLIIGPDGNPLY
LGGLTGPKGDRGPSGPIGPSGPQGPSGLKGEIGMPGRPGRPGVNGYKGEKGDPGGGTGYG
SPGVPGPPGPPGPPGPATSLDRFNRFDENSRSYQAVKGEKGERGDRGPPGIPGAASNFDI
YTFKNELKGEQGDTGVKGQKGEPAGGYYDPRFGGPLGPPGPPGNPGLPGPKGESIVGPPG
PAGPSGPPGVGYDGRPGPAGPPGPPGPPGSPSFSGAFRPNYPVSVPGPPGPPGPPGSPGL
SSGVTVLRSYDIMIATARQQPEGSLIYIMDKADLYLRVQDGLRQVLLGEYRTFFGDLGNE
VAEVQPPPVVVYPHTPDRTANNGAGHYSQSSVVIRPIEPPLRQPSPPVAAADSSEPGLHL
VALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDGYPIM
NLKNQVLLSSWDSIFSEDSSKMRENVPLYSFDGRDILRDSAWPEKMVWHGSSEKGHRQMD
HYCETWRAGEHAVTGLASSLQSGRLLQQTPSGCSGSYIVLCIENASTLPSK
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgaggacctggtttaaaattttgtctcttctgaccctgtgtgtggtctactccaaggct
tggttctggtcctggagtgggactggtacaacattggctccgtggttagaactggaggga
tctggtagtgtggcagatagtggagagccaccatctgaaagtagcaccacagttggaaca
gagattattgatgagggaaatgtgatccaaaaggttgggcagacctgggatgagactact
gaaggtcctcaactgacgactgtaattccttcaacacaaccagagaggagacatggagca
gaaaaggctactgcaggaatgtcatcacacagaagtaaacctgaaaacaacggagtctcg
ctgctgcagctgattggagatcctcctccggatatattccccgaggtggacggcccggaa
aacagccccgcctacctctttggtccagattccaccacaggccagctcgcgcgtgcacac
ctccccagcccattctacagaaactttgccctcatcttcaacctgaaacccacttctgat
gatggtggcatcatcttctccatcacagactcctcacagcaggtcatacatgtgggggtc
aaactgtcagacgtgcagggcaccgagcagaatgtcattttttactatagcgagcccgga
gcaaagcagtcctacgaggcggccaggttccgtgtgccctccatgaaggacacctggaac
cgttttgctgtcgctgtggaggatgacaaagtgatgttctacctgaactgtgatgcagaa
catcaggtgatgcgaatcgagagatccccagatgagatgaagctggaggccggtgccggg
gtatttgttggtcaagctggaggggaacatcctgagaaatttcagggtgcgatcagtgag
ctgagggtggtgggagacccccgcgcggcagagcggctctgtgaagaggatgatgactcg
gatatggcttcaggagaaggaagtggctacgaagaaaccagacgcccaaagccctacacg
gagaaacagcaatccacgacaacgtttgtgtcttctccgcccatcccacagccgccactg
gataggaaaggagaggagggaaccttcagagaaacaggtgcagtcgttgctaaaggacaa
aagggcgacagaggggacaaaggagagaaaggagacaggggtccgatggggccgaaggga
gaaatggactccagctcaagctcacaggggggaatccgtgagcacaagggagaacctggt
gataaaggagcaaagggcaacgcaggttttggataccctggtaaaaagggagaaccaggc
cctcaaggaccaccagggccccctggacctccagggcccacatctgagtattcagttgga
agtgacgggtcagttgtttcaaaagttcctggaccccgcggaccatctggatctcctggt
cctcagggaccaccaggagaagatggagaaccaggtgatcccggtgaagacggaaaaact
ggtcctcagggacccccaggctttccgggaaccccaggtgacccaggactgaaaggagag
aagggagaccgtggagagggccaccctggccccagggggcctcctggaccgcctggcaca
ggattcagatctacatttgaggacatggaggcctctggattcccagatttggaatccatt
cggggacttccaggtccaccaggtcctcctggtccaccaggtcttccgggtccctcctca
gcaagcacagcagtgagctctggagcttttggacccccaggaaaggatggggtacctggt
caacctggtctgccgggtttacctggtgctgatggtcttccaggagctcctggtcctagg
ggagaaaagggggattcgggtgagctgggacttccaggagcaattggagaaaagggagct
caaggagaacctggtctaccgggacctgcaggagaacctggactggctggtctgccggga
cccatgggaccagttggtcgtcctggacctccagggcctccgggaccaggtcatcgggtt
ggatttgatgacatggaggactccagtgggattttcaccaatggacttcctggtatcaga
ggaccagaaggaatacagggtcctcctggtctacctggacacccaggtagacctggcttg
gctggtacacaaggtccaaagggtgagcagggtcctcaaggaagagacggacaaccaggc
ctggatggcttcccagggcctccgggtcaaaagggtcacaaaggtgacaagggagagacg
ggtgaagctggtcgagatggaactggactcccaggtccaccaggtccacctggaccacct
ggacaaataatctaccagccatctgacaatggggcggctggtttacctggaagagctgga
tttcctggtcctgctggaccgaaaggggacagaggtgaccctggtcctccaggttatggc
ctgaagggtgaaaaaggagcgccaggcttgataattggacctgatggaaatcctttgtat
ctgggagggctaactggccccaagggagacagaggaccttcaggacctattggaccttct
ggtcctcagggaccttctggactgaaaggtgaaataggaatgcctggaagacctggtcgc
ccaggtgtgaatggatacaagggtgaaaagggagacccaggaggtggcacaggttatgga
tccccaggagtccctggtccaccaggacctcctggaccaccaggaccagccacttctttg
gatcgctttaatcgttttgatgaaaattcacggagttaccaagcagtaaaaggagaaaaa
ggagagcgtggtgaccgtggacctcctgggatcccaggggcagcatcgaattttgatatt
tacacattcaagaatgagctaaagggagaacagggagatacaggagtgaagggacagaag
ggtgagccagctggtggatattatgacccacgttttggaggcccgctgggaccaccagga
cctccaggaaacccaggcctaccgggtccaaagggagaatctatagtgggccctcctgga
cccgcaggaccttctggaccaccgggtgttggttatgatggacgtccaggtccagcagga
ccacctgggcctccaggacctccaggatctccctcattttctggagcattcaggcccaat
tatcctgtcagtgtccctggacctcctggccccccaggcccacctgggagtcctggtctc
tcctctggggtgacagttttgaggtcatatgacatcatgattgctacagccagacagcag
cctgagggcagtctcatatacatcatggacaaagcagacctttatctgagagtgcaggat
ggacttcgacaagtcctcctcggagagtacagaaccttctttggagatctgggcaacgag
gtggcagaagtccagcccccaccggtggttgtgtacccccacaccccagaccggactgcc
aacaacggagcgggtcattactcccagagcagtgtggtcatccgacccattgagcccccg
ctgcggcagcccagccccccggtggctgcagctgactcgtcagaaccaggactccacctc
gttgcattgaatgctcctcagactggcaacatgcgagggattcgcggggctgacttcctg
tgcttccagcaggcccgcgctgttgggctgaagggaacattcagagccttcctgtcctcc
aagctccaagacctctacaccatcgtccgcaggtcggacagggacggataccccatcatg
aatctcaagaaccaagtgttgctcagcagctgggactccatcttcagcgaggacagcagc
aaaatgagggagaatgtaccgttatactcgtttgatggtagagacatcctcagggacagt
gcatggccagagaagatggtctggcacggatcaagcgaaaagggccaccggcaaatggat
cattactgtgaaacgtggcgggcaggtgagcacgctgtgacgggcctggcgtcgtccctg
cagagcgggcgcctcctgcagcagacgcccagcggctgctccggctcctacatcgtcctc
tgcattgaaaacgcctccacattgccctccaaataa
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integrated database retrieval system
