Girardinichthys multiradiatus (darkedged splitfin): 124871386
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Entry
124871386 CDS
T08099
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124871386 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124871386 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124871386 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmu04147
]
124871386 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124871386 (col4a1)
Exosome [BR:
gmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124871386 (col4a1)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124871386 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124871386
NCBI-ProteinID:
XP_047226611
LinkDB
All DBs
Position
7:22169443..22230210
Genome browser
AA seq
1639 aa
AA seq
DB search
MLLPSGALPLLAAFYSTLDLIWAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GHEGPPGPMGPKGDLGALGAPGLKGVRGPPGLPGFPGNPGLPGLNGNDGPPGPPGIPGCN
GTKGERGMDGINGFHGLQGPPGRPGLQGMKGDPGGVIDVIKGDKGLPGTPGLPGIPGPFG
PSGPPGPRGYSGIKGDPGLPGPPGEKGDRLAFVSEKGDKGERGLRGPPGPPGPPQEVEGQ
TTVVVPGPRGYPGEKGDKGDKGFCLPHQHGIKGQQGPPGPRGKPGKDGNDGTKGEKGFIG
APGSTGLSGEKGDRGPPGYASGPPGLPGLRGPPGIQGEKGFRGPHGEAGPPGRSIEGSRG
EPGRKGEMGEKGNRGLDGESLSGPPGRTGPIGPPGQPGPAPDPNECQMEKGDRGPPGQPG
LSGEDGQKGEKGETCVSCKGTVIPGLTGPAGVKGDKGHPGPVGGKGEKGNSGPPGELGTP
GAPGSPGLMGAPGAIGEPGDIFIAPGYKGEKGIAGRPGFQGQAGKDGKPGSDGLPGQPGP
KGEPAKEGIKGERGPDGEPGLIGPPGERGPPGVPGFGQPGWPGEKGSQGKPGITGAPGLP
GLKGEPGKGISTPGPQGPPGPRGASGIPGHQGERGLQGDHGLPGFPGEKGEQGPPGIGFP
GPAGAKGISGIPGAPGVPGEPGRPGQVGFTGKPGPPGQKGEPGRGLPGPKGSQGMPGISG
FPGEKGGIGLPGIPGLEGQTGPPGPQGVKGEVGPPGPPGQIGQPGAPGKGLPGPQGPQGP
RGEAGPYGREGIKGEKGYPGPPGLDMPGPQGEKGIPGLPGDQGVKGLPGLQGSPGRDGLT
GSQGLKGEMGVMGTPGSTGFPGPPGEPGSPGLRGVPGAIGPRGDLGEEGQKGDRGDPGPE
GPPGNLTQYDMEHMKGEKGDTGDPGEPGSAGQKGFPGLQGEQGMPGKDGAPGSPGQPGQK
GDPGFPGEPGTMGPAGPKGSVGEMGEPGVIGPKGSKGNIGTPGHPGFRGTDGEKGDLGQP
GEPGIGVPGFPGEKGLTGQPGFPGTRGDKGEKGQEGMPGKPGNQGQKGDKGGAGYPGQSG
RPGEKGNPGLPGSAGEPGRDGRPGEGGLQGSPGPRGEKGDPGKDGIPGSSGERGDPGIPG
LGLPGPPGALGGKGEKGDPGFPGMPGQSGVPGIKGEKGLPGPQGSQGEPGERGLPGISLQ
GPKGELGVRGAVGETGTPGVPGPAGVPGTEGTKGEKGDAGQPGYQGESGQKGDSGSPGFP
GPSGLPGIDGQKGERGLQGVPGFPGKEGTVGEIGFKGELGDRGFPGEKGNEGPPGLPGPR
ILIKGDSGLPGDQGLPGPQGPAGLPGQKGQQGVMGIQGPKGEVGIHGFDGQPGAKGDRGV
PGPQGPRGYPGPPGPDGVQGQVGPPGPSSMDHGFLVTRHSQNVEIPHCPGGTSLIYEGYS
LLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMS
MAPITGDSIKPFISRCAVCEAPAMVIAVHSQTIRIPPCPQGWDSLWIGYSFVMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIETDEMFTKPVPTTLKA
GSLRTHISRCQVCMKRTFT
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcgcgctgccgctgctggcggctttctactccactttagacctg
atatgggctgagggttgtggagcttcatgtggaaaatgtgactgcagtggagtgaaagga
gctaagggtgaacgtggatttcctggtcttcagggtaatatgggattcccaggaatgcag
ggacatgaggggcctcctgggccaatgggccccaagggagatctgggagcacttggagct
ccgggactaaaaggagtgcgaggtccacctggcctgccagggtttccaggaaacccagga
ctaccaggcctcaacggaaatgacggtccaccaggtccacctggaatcccaggatgcaat
gggaccaaaggcgaaagaggaatggacggcattaatggttttcatggacttcaagggcca
cctggccgcccaggactacaaggaatgaaaggagaccctggtggtgtgattgatgtgata
aaaggagacaaagggttaccaggcacacctggactacctggaatacctggaccctttgga
ccaagcggacctccgggaccccgaggatattcaggaataaaaggtgatcctggactgcct
ggtcctccaggagagaaaggtgacaggctggcctttgtgagtgaaaaaggagataagggt
gagcggggactcagaggccctcctggtccccctggaccacctcaagaagtggaaggacag
accacagtagtcgtaccaggaccacggggatacccgggagagaagggtgacaaaggggat
aaaggcttctgtctccctcatcagcatggaatcaaaggtcaacaagggccacctggacca
agaggtaaacctggtaaagatggcaacgatgggacaaagggagaaaaaggcttcattgga
gctcctggatctactggtttgtcgggtgagaagggcgatagaggaccaccaggttacgct
agcggtccacctggtcttcctggcctacgtggtccccctgggatacaaggagaaaaaggt
ttccgtggtcctcacggagaggctggtccaccaggccgctccatcgagggttctcgtggc
gagccgggtcggaagggagaaatgggtgaaaagggcaacagaggcttagatggagaatct
ctttctggaccaccaggaagaacagggcccatcggaccccctgggcaaccaggaccagcc
cctgaccctaacgagtgccagatggagaaaggagatcgtggtccacctggacaaccagga
ttatcaggggaagatgggcaaaagggtgagaaaggagaaacttgtgttagttgtaaaggc
accgtcatacctggattaactggccctgcaggcgttaaaggagataaaggacacccaggt
ccagttggaggcaaaggagaaaagggtaattctgggccacctggagaacttggaacacct
ggcgctccaggatctcctggactgatgggggcccctggggctataggtgaacctggagac
attttcattgcgcctggttataagggagagaaaggtattgctggacgtccgggatttcag
ggacaagcgggcaaggatggaaagccggggagcgatggacttccaggtcaaccaggcccc
aaaggagaacctgccaaagagggtattaaaggtgaacgtggaccagatggagagcctggt
cttattgggcctcctggagaaaggggtccacctggtgttccagggttcggccaaccgggt
tggcctggagaaaaaggcagtcagggaaagccaggcattacaggagctccaggacttcct
ggtctaaaaggagagccaggtaaaggtattagcactccgggaccacaggggccacctgga
ccacgaggagctagtggcataccaggacatcaaggtgaaagaggtcttcaaggtgaccat
ggtctacctggttttcctggagaaaagggtgagcagggaccacctggaattggatttccc
ggcccagcgggtgctaaaggaatcagtggaattcctggagccccaggagtgccaggagag
cctggaagaccaggacaggttggcttcactggaaaacctggtccacctgggcaaaaaggt
gaacctggacggggtcttccaggcccaaaaggttcacagggcatgccaggaatcagtgga
ttcccaggagaaaagggtggcattggtcttccaggaattcccgggctagaaggacagaca
ggaccaccaggacctcagggtgttaaaggtgaagttggacctccaggaccacctggtcag
attggccaaccaggtgctccagggaaaggacttcctggaccgcaaggacctcaaggacca
cgtggagaggcaggaccgtatggtagagaaggtataaaaggagagaagggctaccctggc
cctccaggtctcgatatgccggggcctcaaggagagaaaggtatccctggcctcccagga
gaccaaggtgtcaaaggactgccaggtctacaaggctcgccaggtcgagatgggctaact
gggtcccaaggtctcaaaggtgaaatgggagttatgggaactccaggatcgacaggattt
cccggaccacctggagaacctggatcccctggtctgagaggtgttcctggtgctattgga
ccaagaggagatctcggagaagaaggtcagaaaggtgacaggggagatccaggtcctgaa
ggtcctcccggaaacctgactcaatatgatatggagcacatgaaaggggaaaagggagac
actggagacccaggtgaacctggttctgctggacagaagggcttccctggccttcaagga
gaacagggaatgcctggcaaagatggagcacctgggtcacctggccagccaggtcagaaa
ggagatcctggttttcctggagaacctggtaccatgggaccagctgggccaaaaggcagt
gtgggggagatgggagaaccaggtgtgattggtccaaagggttccaaaggaaacattggt
acaccgggtcatcctgggttcagagggactgatggtgaaaaaggagacctgggacaacct
ggtgagccaggtattggtgttcctggatttccaggagaaaagggactgacaggtcagcca
ggatttccagggactcgtggagacaagggtgagaagggtcaagagggaatgcctggaaaa
ccaggaaaccaaggacagaaaggtgacaaaggaggtgctggatacccgggacagtcaggc
aggccgggagaaaagggtaatcctggacttcctggatctgctggagagcctggtcgtgat
ggccgtcctggggaaggtggcctacagggatctcctggtcctcgtggagagaagggtgac
cctggaaaggatggcatccctggatcctctggagagagaggagacccaggtataccaggt
ctaggtttgcctggaccacctggagctcttggagggaaaggtgaaaaaggtgatccgggt
tttcctggcatgcctggtcaatcaggtgtacctggtatcaaaggagaaaaaggacttcct
ggtcctcaaggttcacagggggagccaggggaacgaggtcttccaggcatctcccttcag
ggccccaaaggagagctgggcgtgagaggagcagtcggggaaacaggaaccccaggagtg
ccaggacctgctggagtgccaggcacagagggcacaaagggagagaaaggtgatgctggt
cagcccggttaccagggagagtcgggacaaaagggtgactctggatctcctggatttcct
gggccgtctggccttccaggtatcgacgggcagaagggagagcgagggttacagggggtt
cctggcttcccaggtaaagaaggtactgtgggtgagattggattcaaaggagaactgggt
gacagaggattccctggagaaaaaggcaatgaaggcccccctggtctcccaggccccagg
atactgatcaaaggagatagtggattaccaggagatcagggtctccctggtccacaggga
cctgcagggcttccaggacagaaaggacagcaaggtgtgatgggtattcagggcccaaaa
ggtgaagtaggtattcatggatttgatggtcagccaggagccaaaggagaccgtggtgtg
ccagggccacaaggacccagaggatatccaggtcccccaggacccgacggtgttcaaggt
caagtgggtccacctggcccatcttccatggaccatggtttcttagtaacacgtcacagc
caaaatgtggagattccacattgtcctgggggtactagcttaatctacgaaggctactcc
ttgctctatgtgcaaggcaatgagcggtcacatggacaagacttaggtacggcaggcagt
tgtctccgaaagttcagccccatgccgttcttgttctgtaacatcaacaatgtgtgcaac
tttgcatctcgtaatgattactcctactggctaacctcaccggagccaatgcccatgagc
atggcacctatcaccggggacagcatcaaacccttcatcagcaggtgtgctgtatgtgaa
gctcccgctatggtgatcgcagtccacagtcagacgatcaggatcccaccttgccctcaa
ggctgggactctctgtggattggctactcctttgtcatgcacaccagtgcaggtgctgag
ggttcaggtcaggctttggcctcccctggttcctgtctggaggagtttcgcagcgctcca
ttcattgaatgtcacggccgaggaacctgcaactactacgccaactcctacagcttctgg
ctggccaccatcgagacagacgagatgtttacgaaacccgttccaacaacgcttaaagca
ggcagcctccgaacacacataagccgctgtcaagtgtgcatgaagaggacattcacttaa
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integrated database retrieval system
