Girardinichthys multiradiatus (darkedged splitfin): 124871518
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Entry
124871518 CDS
T08099
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03013
Nucleocytoplasmic transport
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124871518 (upf3a)
03015 mRNA surveillance pathway
124871518 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124871518 (upf3a)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124871518 (upf3a)
mRNA cycle factors
P-body specific factors
124871518 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
124871518
NCBI-ProteinID:
XP_047226834
LinkDB
All DBs
Position
7:complement(16938098..16947390)
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AA seq
467 aa
AA seq
DB search
MRSDKDQMTAGKEKGIVEIQLKDVPREQENVPTSAKQKEEKKELFTKVVIRRLPPNLSQE
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKSTEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRRFLENYSCEEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKEKSDPCDAGGGKWEKAGGQMKSK
EPKENRGQPESDKEQREQHSRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGY
CQDRAKKEGHHHGYSYCPDNGDKMGKEDREDLSNRKERLRNKDRPAMQLYQPGARNRKRM
SSTNKGYDCLPTGHSHECRTEHCYEVVAMTAEMERGFEKSKDEQSPK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgataaggaccaaatgaccgcgggtaaagagaaaggtatcgtcgaaatacaa
ttaaaagacgtcccaagagagcaggaaaacgttcccaccagcgctaagcagaaagaagag
aagaaggagcttttcacgaaggtggttattcgaagactcccacctaatctgtcacaggaa
caattggaagagcatctcagtcctcttccatcgtatgactattttgagtttttcccagca
gatcaaagtctctatccccacctgttctcccgagcttatatcaactttaaaagcacagaa
gatatcctgctgttcagggatcgatttgatggctatgtcttcattgacaacaagggtcag
gagtatcctgctgtagtagagtttgccccattccagaagatttccaaaaagaagctgaag
aaaaaagatgctaaagccggaagcattgaagaagatccagaatacaggcgattcttggag
aactactcctgtgaggaggagaagtctatggccaatcctgaaacacttcttggggaaata
gaagctaagaccagagagctcattgccaaacgaacaacccctctgctggagtacatcaaa
aataagaagattgaaaagcagaggataagagaggagaagagagaagagagaagaagaagg
gagcttgaaaagaaaaggcaacgggaggaagagaaacgaaagcggcgagaggaggagagg
cgcaagcgaaaagaggcagagaagcagaaaaagctgtctgataaagacattaaaattaag
ctcctaaagaagagtgacagagatgatgacgttgattcagaccgaatgaaggaaaaaagt
gacccttgtgatgcaggtgggggcaaatgggagaaagctggtggacaaatgaagtcaaaa
gaaccaaaagaaaacagaggtcagcctgagagcgacaaagagcagagggagcagcacagc
cgcagacagagagataaggatcaccgcggtaaggatgaagagagaaaacggcaacgacac
cactacgagtttgacaagttcatgcgtcggaaagatgagacaaaatgggggaagggctac
tgccaagatcgagccaagaaagagggtcatcatcatggctattcttactgtcctgacaat
ggagataaaatgggaaaggaggacagggaggacctgagcaatagaaaggaacgcctccga
aacaaggaccgtcctgccatgcagctttatcagccgggcgcgcgtaacaggaagcgtatg
agttcaactaataaaggctatgactgcctccccactggccattcccacgaatgcaggacg
gagcattgttatgaggttgtcgccatgacagcggagatggagaggggctttgagaaaagc
aaagatgagcagtccccaaaatga
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