Girardinichthys multiradiatus (darkedged splitfin): 124871800
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Entry
124871800 CDS
T08099
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03015
mRNA surveillance pathway
gmu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124871800 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
124871800 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124871800 (sympk)
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124871800 (sympk)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124871800 (sympk)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124871800 (sympk)
U7-dependent histone pre-mRNA processing factors
124871800 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
124871800
NCBI-ProteinID:
XP_047227318
LinkDB
All DBs
Position
7:complement(48226504..48248590)
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AA seq
1243 aa
AA seq
DB search
MERPSKEGGPLTVIDITTSEKVVELLNQAALIPTDEKLNVLKQVQELILNKDPSLLDNFL
DEIIAFQTDRSNEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKVILTLT
QLYKVTLQWLVHSKTVSEMQEACWDLVTQMTGEVLTMLDSENDGIRTHAIKFTESLIITL
SPRTPESDVPKRQEGDISLDKVPRDHSYIRYDTLSEEGKTALEKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPSS
LEFQVQISTLLLDLGMPQSEITRHTPVPREQRKRPRYEQSSEGKKVKMGELRHMFRDPDF
AFILSTKLCFVILPSEPTLMEDDEDKEEPAPLTVPKPAVVSAPQSAIDLTAEFLCPLLTS
ENVANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQ
SKAREDEGGKEDQTEDDSAAKDVLIKRKLSTVMMGQAISVVGGYTEKPPTTEAPAVKRLP
EPILPSAQTKMTGAGGRKKVFRLADVIQPLSDSQIGILSSKAVKRILHSEKAITQSGMTH
VRVKLLSRLVTQFEGMMKEEVLEYILDDIRTRSDLAFALLYQEYNTYLSQLPTGLLDSYD
HCLYTLLSGLQEKPEQRDGLFTKLVLEAPIITESALEVIRRYCEDESRVYLGMTTLKELI
VKRPSRQFQYLHVLLDLSSHEKEKVRSTALAFLKRMYEKDHLRDYIEKFALNYLQLLVHP
NPPSLLFGADKDTEVAAPWTEDTVRQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSV
LRAIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHK
RVPDVRFLIPVINGLEKSEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPG
DLLIALHNIDSTKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVI
QSLTMYPRLVGFVMNILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTS
VFERCPEMRASLLQHVLSFTPHQQAHIPTSVMVVLEANKKPEPKPVEPVMEKEFEPAPAA
EEPSVMESIEPEPPLQQEPILLKDEEEPMEQEEAEHTPLAETLDSISQEDLTKDAEEPTP
PPEPAEEPMEVPQPEPSDQPESLKDPESNMAAPEAGSGSDDVD
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtccttcaaaggaggggggacctctcactgtcatcgacatcaccaccagtgaa
aaggtcgtggagcttctgaatcaggcagctctgatacccacagatgaaaagcttaatgtt
ctcaaacaggttcaagaacttatcctcaataaggatccatctcttctcgacaactttttg
gatgagatcatcgccttccagaccgacaggtcgaatgaagtacggaagtttgtaattgga
ttcatagaggaagcatgtaaacgggacaacgagcttctcctcaggctgatcgccaacctc
aacatgttgctgaaggacgagagtgtaaacgtggtgaagaaggtcatcctcacccttact
cagctgtacaaagttacactacagtggttggtgcactccaaaacggtgtcggagatgcag
gaggcatgctgggacttggtcacgcagatgaccggggaagttttgacaatgctcgactct
gagaacgacggcattcgcactcacgccatcaagttcacagaatcactgatcattacccta
tcgccacggacgccggagtccgacgtccctaagagacaggaaggagacattagtctggac
aaagttcccagagaccactcctacatccgctacgacaccttgtcagaggaggggaagacc
gccctggagaaactgttgaagttcatggtccacccagcgatttccagcattaacctgacc
acagcactgggttctctggccaccatcgcccgtcagagaccaatgtttatgtcagaagtg
gtgcaagcttacgagacgctgcatgcaaacctccctccgactctggctaagtctcaggtg
agcagcgttcggaagaacctgaagctacacttggtagcggttctcaagcatcccagcagc
ctcgagttccaggttcaaatcagcactctgctcctggatctgggaatgcctcagagcgaa
ataacccgacacactcctgtaccacgggagcagcgcaaaaggcctcggtatgaacagtcc
agcgaggggaagaaggtcaagatgggtgagttacgacacatgttcagagatcctgacttt
gcatttattctcagtaccaaactatgttttgttatcctgccttcagagccgactcttatg
gaagacgatgaggacaaagaggagccagctcccctcacagtccctaagccagctgtggtt
tcagctccacaatctgccattgacctcacggctgagttcctttgcccactgctgacatcg
gaaaacgtagccaacctggtgctcatcagcatggtctacctgcccgatgtcatgccagcg
tccttccaggccacgtacacacctgtagagtcagctggcactgatgcccaaattaaacat
ctggccagactgatggcgacgcagatgactgcagcagggatcggcccaggtctggaacag
agcaaagccagagaggacgaagggggcaaagaggatcaaactgaggatgattctgctgct
aaagatgttctgatcaagcggaaactttccacggtgatgatgggccaggccatctctgtg
gtggggggttacaccgagaagcctccaaccacagaagctcctgcagtcaagaggcttcct
gaacccatccttccctctgcacagaccaagatgacgggagccggtgggaggaaaaaggtg
tttcgactggcagatgtgatccagcctttatccgactcccagattgggattttatcttcc
aaagcggtgaagcgtattctccactcagaaaaggcgatcacacagagcgggatgacccat
gtcagggtgaagctcctctccaggctggtgacccagtttgaagggatgatgaaagaagaa
gttctggagtacattctggacgacatccgaacgaggagcgacctggcgtttgctcttctc
taccaggagtacaacacctacctcagccagctgccgacggggctgctggacagctacgac
cactgtctctacaccctgctgtcgggcctccaggagaagcctgagcagagggacggtctg
ttcacaaagttggtcctggaggctcctatcatcacggagtcggcgctggaagtgatccga
cggtactgcgaggacgagtctcgggtgtatttgggcatgacaactctgaaggagctcatc
gtcaagcggccctccaggcagtttcagtatctgcacgtgctcctggacctgagctcgcat
gagaaggagaaggttcggagcacagcgttggcttttctgaagcgcatgtatgagaaggac
cacctcagagactacatcgagaagtttgccctgaactacctgcagctcctggttcacccc
aaccccccgtctctgctgtttggagccgacaaagacacagaggtggctgctccatggact
gaagacactgtgagacagtgtctcttcctctatctgtctctgcttcctctgaaccaccgg
ctggtccacgagttggcgtctgtctacaccgaggccatcgctgacatcaaacgcagcgtg
ctccgagccatcgagcagcccatccgtggaatggggatgaactctcctgagctgcttctt
ctggttgaaaactgccctaaaggagcagagactctggtcactcgctgtctgcacattttg
accgataaagtgcctccatcaccggagctggtggagagagtgcgagacctttaccacaaa
cgagtgccagatgttcgcttcctcatccctgtcatcaacggtctggaaaagagcgaagtc
atccaggctctaccaaaactcatcaaactcaacccgattgttgtgaaggaggttttcaac
agactgctgggaactcaacacagtgaggggagctcctcggtttctcctctaactccagga
gacctgctcatcgccttacacaacatcgactcaacaaagtgtgacatgaagtcaatcata
aaagccaccaacctttgctttggggagaagaacgtttacacctctgaggtcctggccgtg
gtgatgcagcagctgatggagcagagtcctctccccatgctgctcatgcgcaccgtcatc
cagtctctcaccatgtaccccagattggtcgggtttgtcatgaacatcctgtcccgcctg
atagtcaagcaggtgtggaagtatcctaaagtgtgggagggattcgtgaagtgctgccag
aggacgaagcctcagtcctacagcgtgctccttcagctgccccctgcacagctgacgagt
gtgttcgagcgctgtccagagatgagagcttctctcctgcagcacgtcctctccttcacg
cctcatcagcaagctcacatcccgacctccgtcatggtggtcctggaagcaaataaaaag
ccagaaccaaagcctgtggagccagtcatggagaaggagtttgaaccggctccagctgct
gaagaaccttctgtcatggagtccatagaacccgagccgcctctccagcaggaaccgatt
ctactaaaggatgaagaggaaccgatggagcaggaagaggctgaacatacaccactagct
gaaactcttgacagtatttcccaggaggatttgacaaaggatgcagaggaaccgacaccg
cctccagaaccagctgaggagccgatggaggtgccccagcctgaaccttcggatcagccg
gagtcgctcaaagatcctgaatcaaacatggcagcgcctgaagctggaagtgggtcggac
gatgtggactaa
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