Girardinichthys multiradiatus (darkedged splitfin): 124872161
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Entry
124872161 CDS
T08099
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124872161 (col2a1a)
04518 Integrin signaling
124872161 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124872161 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124872161 (col2a1a)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124872161 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
124872161
NCBI-ProteinID:
XP_047227845
LinkDB
All DBs
Position
1:35377579..35404725
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AA seq
1487 aa
AA seq
DB search
MFSLVDSRTVLLLVASQVVLLSMVRCQEEDDQEAGGCIQDTQQYNDKDVWKPEPCRICVC
DNGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPSGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMSSGFDEKAGSVSMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGAPGETGESGPGGPIG
PRGPPGPSGKPGSDGDPGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGEAGSAGENGTPGSMGPRGLPGERGRPGASGTAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGVRGAEGPQGPRGEAGTPGSPGPAGAAGNPGTDGIPGAKG
SAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGETGPKGELGPAGPQG
APGPAGEEGKRGARGEPGTAGPIGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLLGRPGLRGLPGKDGETGPSGPSGPAGPAGERGEQGQPG
PPGFQGLPGPTGAPGEAGKPGDQGVPGEGGAPGAVGSRGERGFPGERGGAGVQGLQGPRG
LPGTPGSDGPKGAIGPAGPLGSQGPTGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGLTGPIGAPGVRGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEAGAPGPQGPSGAPGPVGPTGVPGLKGARGAQGAPGVTGFPG
AAGRVGPPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRLGDPGIRGPAGPPGEKGEPG
EDGPPGADGPSGPQGLGGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGGAGDRGSPG
PVGPPGLTGPAGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPGGAPGAPGPPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGPGGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQG
LPGPPGPAGDAGTAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSSLK
SLNNQIENLRNPDGTQKNPARSCRDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMENG
ETCVYPSIAKVPKKNWWTSNSRDRKHIWFGETMNGGFHFSYAQDGPAASAASVQLTFLRL
LSNEASQNLTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKS
HTGRWGKTVLEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttagtggactcaaggactgttttgctgcttgtagcatcccaagttgtttta
ttatccatggtcagatgtcaagaagaggatgaccaggaggcaggtggctgtatccaggac
acccagcagtataatgataaggatgtgtggaagccagagccatgccgcatctgtgtgtgt
gacaatggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgcgccaac
cctatcatcccatctggagaatgctgccccatctgccctgctgatgccactgcccctatt
gaggcgtttggtgctaagggccagaagggagaaccaggagagattgcagatgttgtagga
cctagaggaccaccaggccctatgggcccctcaggtgagcagggaccacgtggagaagct
ggcgcaaaaggcgataagggaaatcctggaccaagaggaagagacggcgaacctggcaca
cctggcaatcctggaccccccggcccacctggaccaccaggtcttggagggaactttgct
gctcagatgtcttcaggctttgatgaaaaggctggaagtgtttcgatgggggtgatgcaa
ggaccaatgggtcccatgggtccccgtggtccccctggacctactggagctcctgggcca
cagggttttcaaggagcacctggagagactggagagtcgggcccaggtggaccaattgga
cctcgtggaccacctggaccatctggaaaaccaggaagtgatggtgaccctggtaaaccc
ggcaaacccggtgagcgtggacctgctgggcctcagggagctcgtggatttcctggaaca
cccggacttcctggaattaaaggacacagaggtcaccctggtctggatggagctaaggga
gagactggtgctgcaggagccaagggagaggctggttctgctggagaaaacggcacccct
ggatctatgggcccacggggtctgcctggtgagaggggacgtcctggtgcttctggaact
gcaggtgcccgtggaaacgatggcttgcctggtcctgctgggccaccgggcccagtcggt
cctgctggagctcccggtttcccaggatccccaggagccaagggtgaagctggtcctacc
ggtgtccgtggagctgaaggaccacagggacctcgtggagaggctggtactccaggatcg
ccaggaccagctggggcagcgggtaaccccggcactgatggtattcctggagccaaaggt
tctgctggtggtcctggtattgctggcgctcctggatttcctggcccccgtggcccaccc
ggaccacagggagcaactggacctcttgggcccaaaggacaatctggagatcctggtctt
ccaggattgaagggtgaaactggaccaaagggagaacttggcccagctggtcctcaaggt
gctcctggccctgctggagaagaagggaagaggggtgcaaggggagagcctggaactgct
ggaccaatcggacctccaggagaaagaggagctcctggtaaccgtggtttcccgggtcag
gatggtcttgctggtgctaagggtgcccccggtgaccgtggcgtccctggtgctgctggg
cctaaaggtgctactggagatcctggacgtacaggcgaggccggcctccctggagccaga
ggtcttactggtcgtcctggagatgctggtccccaaggcaaagttggaccctctggcgct
cctggtgaggatggtcgtcctggtccacctggtcccctgggagcacgtggacagcccgga
gtgatgggattccccggaccaaaaggagcaaatggtgaacctggaaagccaggagagaag
ggactccttggtcgacctggtctgagaggactacctggaaaagatggtgagactggtcct
tctggaccttctggacctgctggacctgctggagagagaggagagcaaggacagcctgga
cctcctggcttccagggtctgcccgggccaactggtgccccaggagaagctggaaaacct
ggagatcaaggtgttcctggagagggtggagctcctggtgctgttggatcaagaggtgag
cgtggtttccctggtgagaggggtggtgctggagttcagggtcttcaaggaccccgtgga
cttcctggaacacctggaagtgatggacccaagggggcaattggaccagctggtcctctt
ggatctcagggccccacgggtctgcaaggtatgcctggagagagaggagctggtggtatt
ccaggagccaagggagacagaggggacaatggacagaaggggcctgagggcgctcctgga
aaagatggtgcaagaggtttgaccggtcctattggtcctcctggcccatctggacccaac
ggtgccaagggtgagactggacttactggccctattggtgctcctggtgtccgtggtgct
cctggtgaccgtggtgaggttggtcctcctgggcctgctggctttgctggacctcctggt
gcagatggtcagccaggtgccaagggagagctcggtgagtccggacagaagggagaagct
ggtgctcctgggcctcagggaccgtcaggagctcctgggccggtgggacctactggtgta
cctggacttaagggagcacgtggcgctcagggagctccaggtgtcacaggtttccctggt
gctgctggcagagttggacctcctggacctaacggtaaccctggccctgccggtcctgct
ggtgctgctggtaaagatggtccaaaaggtgttcgtggtgatgctggccctccaggaaga
ctaggagatccagggatccgtggacccgctggccctccaggagagaagggagagcctgga
gaagatggacctcctggtgctgatggtccttcaggtcctcagggtttgggtggaactcgt
ggtattgttggtttgcctggtcagcgcggtgagagaggcttccctggtctccctggacct
tctggagagcctggtaaacagggagggcctggtggtgctggtgaccgtggatctcctgga
cctgttggaccccctggactcactggaccagctggagagcccggcagagagggtacccct
ggatcagatggacctcctggtagagacggggctgctggagtcaaaggagagcgcggtaac
accggtcctggaggtgctcctggagctcctggcccccctggtgctcctgggccagttgga
cccctcggcaagcagggagacagaggagaggctggtgctcaaggacctgcaggaccacca
ggaccaggtggcgctagaggaatagctgggcctcaaggaccacgtggagataagggagag
gcgggtgagtctggagagaggggacaaaagggtcaccgtggcttcaccggtctgcagggt
cttcctggacctccaggtcctgctggagatgccggaactgccggacctgctggaccaagc
ggtgctaagggaccccctggtccagttggaccagctggcaaagacggatctaatggacag
cctggccccattggaccccctggacctcgaggacgctctggagaaactggtcctgctggt
ccccctggtaatcctggcccccctggtcctcctggtccaccaggtccaggcattgacatc
tctgcttttgctggcctgggtcagactgagaagtctcctgatcctctcaggtatatgagg
gctgatgaggcgtccagctccctgaggcagcatgatattgaggtcgattcttcactcaag
tccctcaacaaccagattgagaacttgcgcaaccctgatggcacccagaaaaaccctgct
cgctcttgcagagacctcaagctgtgccaccctgagtggaagagcggtgactattgggtt
gatcctaaccttggcagcacagccgatgcaatcaaggtcttctgcaacatggagaatgga
gagacctgtgtctacccaagcattgccaaagtgccaaagaagaactggtggaccagcaac
agcagggatcgcaaacacatctggttcggagagacaatgaatggtggcttccacttcagc
tatgctcaggatggtcctgctgccagcgctgcgagcgtccaactgaccttcttgaggctt
ttgtccaatgaagcatcccagaacctcacttatcactgcaaaaacagcattgcctatatg
gatcaggcctcaggaaacctaaagaaggcgttgctactgcagggctccaatgacgtggag
atccgcgcagagggcaacagtcgcttcacgtacagcgtgttagaggatggatgcaagagt
catacaggccggtggggcaagactgtcctcgagtacaaaacacagaaaacctcccgtctg
ccaattgtggacattgcaccaatggacatcggtggagcagatcaagaattcggagtggat
gtaggcgccgtctgcttcttataa
DBGET
integrated database retrieval system
