Girardinichthys multiradiatus (darkedged splitfin): 124872172
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Entry
124872172 CDS
T08099
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03250
Viral life cycle - HIV-1
gmu04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124872172 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
124872172 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmu03400
]
124872172 (samhd1)
DNA repair and recombination proteins [BR:
gmu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124872172 (samhd1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
124872172
NCBI-ProteinID:
XP_047227867
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Position
1:28794492..28822395
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AA seq
627 aa
AA seq
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MASRKRVIEPALSTDEVFKTPEKRVSVVRGSQPDSDFMRWGVGETCQYLQREGLGEWNDT
FRAEKITGVGLRYLKDADLEKIGIKRLGDRLRILHSLSKLGQIEAELSKVFNDPIHGHVE
LHPLLIKIIDTPQFQRLRNIKQLGGTYYVFPGASHNRFEHSIGVGYLAGQLVQTLNEKQP
ELLISRRDILCVQIAGLCHDLGHGPFSHLFDGMFIPKARPGINWKHEAASLKMFDYLVDD
NSLRPVMEQHGLVLPEDLDFIKEQIAGPLDNSSGREEKWPYKGRPKDKSFLYEIVANKKN
GIDVDKWDYFARDCYHLGIQNNFDYRRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTR
NCLHRRAYQHKVGNIIETMITEAFLKADRHIRIQGSQEQIFSLSTAIDDMVAYTKLTDNV
FEQILNSSSQELAEARQILHNIICRHLYKCLGQTRPDKALTVSQETILSWEADLAKSAPQ
SGSLDVVLQPEDFVVSVIVMDYGMKEKNPINNVRFYCKEDPTKAIKICKNQVSKLLPEHF
AEQLIRVYCKKTDEKTVEAAKKHFVQWCMDMNFSKPQDGDIIAPELTPLKLSWRNNNEGE
DSDDSSSKETEVLVNGLKKAKTQLNFK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtcgtaagcgagtcatagagccagctctgagcacggatgaggtgttcaaaacc
ccggagaagagggtgtcggtggtccgaggctcgcagccggactcggacttcatgcggtgg
ggggtcggggaaacctgtcagtacctgcaaagggaaggccttggagaatggaatgataca
ttcagagctgaaaagattacaggtgtggggctgaggtacctcaaggatgcagacctggag
aagattggcataaagcgtctcggtgaccgtctgcggatcctgcacagcctcagcaaactg
gggcagattgaagcagaactcagcaaggtttttaatgatcccatccacggccatgtggag
ctgcacccccttctcatcaagatcatcgacacacctcagtttcagcgacttcgaaacatc
aagcagcttggagggacgtattacgtttttcctggagcatcccacaatcgttttgaacac
agcattggggttgggtacttggctggacaacttgttcaaaccctcaacgagaagcagcca
gagctcctcatctctcgcagggacattctctgtgtgcagatcgctggactctgccatgac
ctgggacatggacctttctcccatttgtttgatggtatgttcatacccaaagcacgtcca
ggaattaattggaagcatgaagctgcctctctaaaaatgtttgactaccttgtggatgac
aacagcctgaggccagtcatggagcagcatggcctggtgctgccagaagacctggacttt
atcaaggagcagattgcaggaccgctggacaatagttcaggtcgagaagagaagtggcca
tacaaaggccgtcctaaagacaagtccttcctctatgagattgtcgccaacaaaaagaac
ggcatcgatgtcgataagtgggattattttgccagggactgctaccacttgggcatccag
aacaactttgactatcgccgcttcctaaaatttgcaagggtctgtgaagtggatgggcag
aagcacatctgcacaagagacaaggaggtgggcaatctgtacgacatgttccacactagg
aactgtctccacaggagagcctaccagcacaaagtgggcaacatcattgagacaatgatc
acagaagcttttttaaaagcagatcgacacatcaggattcaaggctctcaggaacaaatc
ttctctctgtccacagctattgatgacatggtggcctacaccaagctgacagataatgtc
tttgaacagatcctgaactcttcctctcaggagcttgcagaagcaaggcagatactgcac
aacatcatctgccggcacctctacaagtgcctcgggcaaacccggccagacaaagccttg
actgtcagtcaggaaaccattctcagctgggaggcagatttggctaaatccgcccctcag
agtggctccctggatgttgttctgcagccagaggactttgtagtcagtgtaatagtaatg
gactatggtatgaaggaaaagaaccccatcaataacgtgcggttttactgcaaggaagat
ccaacaaaagccataaagatctgcaaaaaccaggtatctaaacttctcccagaacacttt
gctgaacagctgatcagggtatactgcaagaaaacagatgagaagactgtggaggctgcc
aagaagcactttgttcaatggtgcatggacatgaacttctcaaagcctcaggatggagat
atcatagcacctgagctcactcctctgaaactcagttggcgcaacaacaacgaaggcgag
gacagtgacgacagcagctccaaagaaacagaggttcttgtgaatgggctcaagaaagct
aaaactcagcttaactttaagtaa
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