Girardinichthys multiradiatus (darkedged splitfin): 124872451
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Entry
124872451 CDS
T08099
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124872451 (taf1c)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
124872451 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Rrn6_K-rich
Motif
Other DBs
NCBI-GeneID:
124872451
NCBI-ProteinID:
XP_047228429
LinkDB
All DBs
Position
8:39607813..39624330
Genome browser
AA seq
1029 aa
AA seq
DB search
MDYQFPEKLFPTFYNCGPPNLVLKHSAGGWGSYEGVLGQGGAGPLSSWTFTSRRQVQGQL
WCQTEPVPVPLLSPRKAFQGYLKPPDPLDFLSHMQNFFMDNGPDAFMCMSEILGDNIYFK
KAKTKEKYRKGSVNVWKTKCYVDLLYKYNMCPMTYQSMSLNKYCSLMSDVIHDIPPELLG
SLLHEELTEQRDHVQFNEGATGGALAFVPFSQSEGCLLYPGGLGMNNLNFHKVALEFSCE
GSSCVDASSSEPVSFQLKAPIRQISCSSLFSDCCVAVRSDYLCGVWRFSERNEPCLLQVV
NTKAAATCVSVSPHILGEVLVASESGAANLWTVGRGMQKVRVEESNLYFNAKSSWRWCEF
SAHPRVMLYADRTGAELSDFRVKAGSSPGHTLFRISSTSDCKSGERLLMCRYLGDVHSFH
HLITTQHSAYIIDERFPCIPMLKWDHMMQAPPVFCHVASGSAASGQAAGGTSKVLLGSQS
SQEITLLQYSGGRVEACSSQGSPQALHRPTDSLRHLLVQIPHRHQTAANRLASPAAGLTC
FQKKAGAGECMCVLQLTEAGDIFYQILEHRLLSKEKSGAAVTGIDPQPLTETETSEQLPA
RVQLLVSDTSSDEDVVMPTQALAARTVVPETPERKICSDSSLEESEDRRRVWKRLQVFVN
EETGLDQESRPDAGVRDGSKQEVEEEEDQSSCRETPLTISKTTLHTWKLWLQKLMQTTQE
KKPHSQGLQHFTVQTNGLLHVSRGDSGGKLEEKLKQDLKRCMSRRSLLLNSSATVAVPDL
VPVPTLVNTEAWTDELSDRLTISWQGEEGWRAWWQDQLGMNKKTKMEVLRRRRRREKEAR
RAAGRHFDFSGSFTTSVSYQTDLDDFSMSGWSSAASQGPWSDTEGGGQLSNQATFLENQG
ASLPSVVQTESLGSIPTTTPQRGTPNRPRTLPPTQPKTPETPTANQRRRSRRLRSLCETQ
GELSQSNVPPLHPTASSASQLCASQSASLRPTFTSLGSSQFPTTSRASQSQRGPSQSSQP
KKKKSRMGF
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggattatcagtttcctgagaaacttttccccacgttttacaactgcggaccgccgaac
ctggtcctgaaacacagcgccggaggatggggctcctatgagggagttttaggccagggc
ggcgccggccctctctccagctggacatttacgtccagacggcaggttcaaggacagtta
tggtgtcagacggagccagtaccagttcccctgctgtctcccagaaaagcttttcaggga
tatttgaagcctccagatccgttggacttcttatcacacatgcagaacttcttcatggat
aacggccctgatgccttcatgtgcatgagtgagatcctgggggataacatctactttaag
aaagcaaagacaaaggaaaaatatcgaaagggttcggtcaacgtgtggaagacgaagtgc
tacgtcgatctgctgtataagtataacatgtgtcccatgacgtatcagtccatgtctctc
aacaagtactgcagcctgatgtcggacgtcatccacgacattcctccggagctgctcggc
tccttgctgcacgaggagctgacggagcagagggaccacgtgcagttcaacgagggagcc
accggaggcgctctggccttcgtccctttctcccagagcgagggctgcctgctgtatccc
ggaggcctgggaatgaacaaccttaacttccacaaagtggcgctggagttctcctgtgag
ggctcctcctgcgtagacgccagcagcagtgagccggtgagcttccagctgaaggctccc
atccgacagatcagctgcagctccctcttcagtgactgctgtgtcgccgtgcggtcggat
tacctctgcggggtctggaggtttagtgaaagaaacgaaccgtgcctgctgcaggtggtc
aacaccaaagctgctgcgacctgtgtcagcgtcagtcctcatattttaggtgaagttctg
gtggcgagtgagagcggagcggcaaacctgtggacagttgggagagggatgcagaaggtt
cgagtggaggagagcaacttgtacttcaacgccaagtcgtcatggagatggtgcgagttc
tcagcccaccctagagtgatgctctacgcagacaggactggggcggagctctcagatttc
agagtgaaggcaggatcgagcccgggtcacactctgtttcggatcagcagcacctcagat
tgtaagagtggagagagactcctcatgtgccggtacctgggggacgtgcactcctttcat
cacctcatcaccacacagcactcggcctacatcattgacgagcgcttcccatgcataccc
atgctcaagtgggatcacatgatgcaggccccacccgtgttctgtcacgtcgcttcgggc
tcagccgcctcgggccaggcggcgggaggaacctctaaggttcttctcggatcacagtct
tctcaggagatcactctgcttcagtactcaggaggtcgagtggaggcctgctccagccaa
ggttctcctcaggctctccacagacccacagacagtctgagacacctcctggtccagatc
ccacaccggcaccaaactgcagccaacagactggcttcgcctgctgcaggtttgacgtgt
ttccagaagaaagccggtgctggggagtgtatgtgtgtcctccagctgacggaggcggga
gacattttctatcagatcctggagcatcgcctgctgagcaaggaaaaatctggagccgcc
gtgacaggaattgatccccaaccactaacggagacggaaacatcagagcagcttccagca
cgtgtccagctgctggtctctgacacgtcgagcgacgaggatgtcgtcatgccgactcag
gctctggctgctcggacggttgttccggaaacacccgagaggaagatttgttcagattct
tctttggaggagtcggaagaccgacgtcgagtttggaaacggcttcaggtttttgtcaac
gaggaaacaggcttggatcaggagagccggccagatgcaggggttagggatgggagtaag
caggaagttgaggaggaagaagatcagagctcctgcagggagactccactaactattagc
aaaacaactctccacacctggaaactttggctgcagaaactcatgcagacgacccaggaa
aagaaacctcacagtcaaggtttgcagcatttcacggtccaaaccaatggtctgctgcac
gtatccagaggggattcaggaggtaaactggaagagaagctgaagcaggatctgaagcgg
tgcatgtcgaggcgatcgctgctgcttaacagctccgctaccgtcgcagtcccggatctg
gtccccgttcccacactggtgaacactgaggcctggacggacgagctcagtgaccgactg
actatctcatggcagggagaagaggggtggcgggcgtggtggcaggatcagctggggatg
aacaagaagacgaagatggaggttctgaggaggaggaggaggagggaaaaggaggcccgg
agagccgcgggccgtcacttcgactttagcggtagcttcacgacatctgtcagctaccag
acggacctggatgacttctccatgtcggggtggtcatcggcagcgagtcagggaccctgg
tcggacacagaaggtggagggcagctgtccaatcaggcaacttttctggagaatcaagga
gcctcactaccttctgtggtccaaactgagtctctaggttccatcccgaccaccacacct
cagagagggacccccaacaggccccggaccctccccccaacccaaccaaaaactcctgag
accccaacagccaatcagaggaggaggagcagaaggctgagatctctgtgcgaaacgcag
ggtgagctgtcgcaaagcaacgttccacctcttcatcccaccgcctcctctgcctctcag
ctctgcgcctcccagtccgcctccctcagaccgaccttcacgtcgttgggctcctctcag
tttccgaccacttccagggcttcacagagccagcgtgggccgtcgcagtcatcccaaccc
aagaagaagaaatctcggatgggattctga
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