Girardinichthys multiradiatus (darkedged splitfin): 124872483
Help
Entry
124872483 CDS
T08099
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124872483 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124872483 (mtrex)
03041 Spliceosome [BR:
gmu03041
]
124872483 (mtrex)
03009 Ribosome biogenesis [BR:
gmu03009
]
124872483 (mtrex)
03016 Transfer RNA biogenesis [BR:
gmu03016
]
124872483 (mtrex)
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124872483 (mtrex)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124872483 (mtrex)
Spliceosome [BR:
gmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124872483 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
124872483 (mtrex)
Ribosome biogenesis [BR:
gmu03009
]
Eukaryotic type
Pre-60S particles
Helicases
124872483 (mtrex)
Transfer RNA biogenesis [BR:
gmu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124872483 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
124872483
NCBI-ProteinID:
XP_047228503
LinkDB
All DBs
Position
8:17907831..17944610
Genome browser
AA seq
1036 aa
AA seq
DB search
MADPFGDGLFSVFDDEQQSSSGKKTPTGISGETGKSAGKGGADGDAGSSLRVKREADSDG
GEEVVFGKKPRHETVSSNDLNLAEFMPQVKVEQVETVEGCSHEVALPADEVYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGGSGGGKWDRGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNNDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVDKI
KKLEEQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKKE
DADFGWGVVVNFSKKANTKASTDSEPLYLVEVLLHCSKESVKDAATEAAKPAAPGETGEM
QVVPVMLHLLTSVSSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYTHPLHSDPSLESVYSLCERKAQIATEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccttttggagacggattgttcagcgtgtttgatgatgaacaacaaagttct
tctggcaaaaagacacccacaggcatctctggtgaaacagggaaatctgcaggtaaaggt
ggtgctgacggggatgcaggttcatctcttcgggtcaagcgagaagcggacagtgatggc
ggagaggaggtggtgtttgggaagaaacctcgtcatgaaacggtctcatccaatgaccta
aacctcgcagaatttatgcctcaagtgaaggtggagcaggtggaaactgtggaaggatgc
tcacatgaggttgctcttccagctgatgaggtgtataaacctctgaaaccaagagtgggg
aaagcagctaaggaatacccattcatactggatcccttccagcgtgaggctatcctgtgt
atcgacaacaaccagtctgtgcttgtgtctgctcacacctctgcaggaaagactgtttgt
gcagagtacgccatcgctctggctcttagagagaagcagagagtcatcttcaccagccca
attaaagctctctccaaccagaagtacagagagatgtatgaagagttccaggatgtggga
ttgatgactggtgatgttaccatcaaccctaccgcctcctgccttgtcatgacaacagag
attctaaggagcatgctgtatcggggatctgagatcatgagggaggtggcgtgggtcatc
tttgatgagatccattacatgagagatacagagcgtggtgtagtttgggaggaaaccatc
atccttcttcctgataatgtgcattatgtattcctgtctgctaccatcccaaacgccaaa
cagtttgctgagtggatctgccatttacacaagcagccttgccatgtggtttacacagac
taccgccccactccactgcaacattatatttttccagcagggggcgatggactccaccta
gttgtcgatgagaacggggacttcagagaagataatttcaacacagccatgcaggttctc
agagatgctggggactccgggggtggcagtggaggtggcaagtgggatcgaggacgaaaa
ggcggcactaagggaccatccagtgttttcaagatagtgaagatgattatggagaggaac
ttccagccagtgatcatttttagcttcagtaagaaggaatgtgaggcctacgccctgcag
gtgtcaaagctggattttaataatgatgatgagaaacgtcttgtggaagaagtatttaac
aatgcagtggactgcctttcagatgaggacaagaaactgcctcaggtcgaacatgtgctg
ccgctcttaaagagagggataggaatccatcatggaggcctactgcccatcctgaaagag
accatcgagattcttttctctgagggtctgctcaaggccttgtttgctacagagaccttc
gccatgggcatcaacatgccagctcggaccgtgctcttcaccagcgcacgcaagttcgat
ggcaagaatcaccgctttattacatcaggcgagtacatccagatgtctgggcgtgctggg
aggagaggaatggatgacagaggaattgttattttcatggtggatgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagcagaccctttgaacagtgctttccacctg
acctacaatatggtgcttaacctgctgcgtgtagaggagatcaacccagagtacatgctg
gagaagtcgttctaccagtttcagcactacagggctttgcctggggttgttgacaaaatt
aagaaactagaggagcagtaccacactattgagattcctaatgaggagagtgtggttact
tactttaagatcaggcagcagttggctaagctgggtaaagagatacaagaatttatccac
aaacccaaatactgcctgcccttcttacagcctgggcgacttgtgaaggtgaaaaaggag
gatgctgactttggctggggagtggttgtaaactttagcaaaaaagcaaacacaaaggcc
agcacagactctgagccgctgtacctggtggaggttttgcttcattgtagtaaggaaagc
gttaaagatgctgcaactgaagcggccaagcctgctgctccaggggagaccggagagatg
caggtggtcccagtgatgctccacctcctcacttctgtcagctcagttcgtctttacatc
cctaaagatctcaggccttttgacaacagacaactcatgcttaagtccatacaggaggtg
cagaaacggttcccagatggtgttcctttactcgaccccatcgacgacatgggcatcaaa
gaccctgccctgaagaaggtgattcagaaggtggaggccttcgaacaccggatgtacaca
cacccgctccacagtgaccctagcttggaatcggtctactccctctgtgagaggaaagcc
cagatcgcaaccgaggttcgaaccgccaaacgggagctgaagaaagctcggaccgtcctg
cagatggatgagctgaagtgtcgaaagagagttctccgaagacttggcttcgccagccct
tctgatgtcatcgaaatgaaaggcagggtcgcctgtgaaatcagcagcgccgatgagctc
ctgctgacagaaatggtgtttaatggcctcttcaacgacctgacggtagaacaagccacc
gccctgctgtcctgcttcgtattccaggagaacgccagcgagatgccaaaactaactgaa
cagctggctgcacccctcaggcaaatgcaggagtgtgcaaagcgtattgccaaagtgtct
gcagacgccaagctggaggtcgatgaggagacttatttaaaccagtttaaaccccacttg
atggatgtagtctttgcctgggccaacggggcgacgtttgctcagatctgcaagatgacc
gacgtcttcgaaggaagcattattcgttgtatgcgacgtctggaggaggttctgcgacag
atgtgctctgcagccaaagccatcggcaacactgaactggagaacaagtttgcagaaggc
ataacgaagattaagagagacatagtgtttgctgccagtctctatttatag
DBGET
integrated database retrieval system
