KEGG   Girardinichthys multiradiatus (darkedged splitfin): 124872708
Entry
124872708         CDS       T08099                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gmu  Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124872708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gmu03041]
    124872708
Spliceosome [BR:gmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    124872708
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 PRP4 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_EML Beta-prop_Aladin Beta-prop_SCAP Beta-prop_Vps41 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 124872708
NCBI-ProteinID: XP_047228942
LinkDB
Position
8:complement(42799480..42821373)
AA seq 473 aa
MSDEEDMAPAMKKSRVFYGSLEEKERERLTLEAASSAVTRNDAVKAGIKAGNINISSGET
MEMEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEDRAKRSHDECQQTWYHEGPASLKEARFWLARYSLPRAMRR
LETARAQKEVPEATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCNFSPDSKMLATASWS
GLCKLWSVPDCTLIRTLRGHNTNVGAIVFRPQAGVSLDQSDVSLASCAADGTVKLWNLES
DEPVADIEGHSDRVSRVSWHPSGRFLGTTCYDHSWRLWDLVVQEEILHQEGHSKGVHDIS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGSAHHTPANHTAIS
RDPANPRSDLNLTMAKCPCQKRVIQRYLKTLMVQLKLDILWIYWLVSASLRIV
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgtcagacgaggaggatatggctccagccatgaagaagagtcgtgttttctatggcagc
ctggaggagaaggagcgagagcgcctgaccctggaggcagcgagcagtgcagttacaaga
aatgatgcggtgaaggcgggcattaaagcaggaaacatcaacatctcatcaggagagacc
atggagatggaggagagggtcagcgagcggcagcaggaagcgcttgctgagtttgagcgg
cgccggcgagccaggcagatcaccgtttcaaccgatgatgctgaagttaaagcgggtctc
cgagcgttgggagagccaatcacgttgttcggagagggcccagctgaccggcgtgagagg
ctgcgcagcgttttgtccgtggtcggtccagacgctctgaagaagtccaggaaagatgag
gatagagccaagaggtcccatgacgagtgccagcagacgtggtaccatgaaggccccgcc
tccctgaaagaagctcgtttctggctggccagatactctctgccacgggcgatgaggcgt
ctggaaactgcacgtgctcagaaggaggttcctgaggcgacaaagacgatccgccaacag
gagctgcacaaatccctgaggaatctgaacaacttctgcagtcagattggagatgatcga
ccaatcagcttctgcaacttcagtccggactccaaaatgttggccacagcgtcttggagc
ggtctgtgtaagctgtggtccgtccctgactgcaccctgattcggaccctgagaggacac
aacaccaatgtaggagccatcgtcttccgcccgcaggccggagtctctcttgaccaatca
gacgtcagcctggcctcctgtgctgctgatgggacggtgaagctgtggaatctggagagt
gatgagccggtggcggacattgagggtcacagtgatcgggtctctcgggtttcctggcat
ccctctggaagattcctaggaaccacctgttatgaccactcgtggcgtttgtgggacctg
gtggttcaggaggagatcctccatcaggaaggtcacagtaaaggagttcatgacatcagc
ttccatcctgatggctctctggctgctacaggagggctggatgcgttcggcagggtttgg
gacctaaggacgggacgctgcgtggttttccttgagggacacttgaaggagatatacagt
gttcacttcagtcccaacgggtcagcgcatcacacaccagccaatcatactgcaattagc
agagatccagccaatccgaggagtgatcttaatttaactatggcaaagtgtccctgccaa
aaaagagtcattcaaagatatttaaaaacgttgatggtccagttgaaactggacattttg
tggatttactggttggtttctgcttcgctgagaattgtgtag

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