Girardinichthys multiradiatus (darkedged splitfin): 124873384
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Entry
124873384 CDS
T08099
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03018
RNA degradation
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124873384 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
124873384 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124873384 (smx5)
03041 Spliceosome [BR:
gmu03041
]
124873384 (smx5)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124873384 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
124873384 (smx5)
Spliceosome [BR:
gmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124873384 (smx5)
Complex C
U2 snRNP components
124873384 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
124873384
NCBI-ProteinID:
XP_047229956
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All DBs
Position
9:complement(40809565..40813401)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAIQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgtttttcaagtcgctggtggggaaggacgttgtggtggagctcaaa
aacgacctgagcatctgtgggacgcttcactctgttgaccagtacctgaacatcaagttg
acagacatcagtgtcacggatccagagaaatatccacatatgctgtcggtgaaaaactgc
ttcatccgtggatcggtggtccggtacgttcagctgccggcagacgaagtggacacgcag
ttgcttcaagacgctgcccgaaaagaagccatacagcagaagcagtga
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