Girardinichthys multiradiatus (darkedged splitfin): 124874594
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Entry
124874594 CDS
T08099
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124874594 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmu03400
]
124874594 (msh2)
DNA repair and recombination proteins [BR:
gmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124874594 (msh2)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
124874594
NCBI-ProteinID:
XP_047231949
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Position
10:13101087..13124445
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AA seq
937 aa
AA seq
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MAVQPKQNQNLSMDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDALFAAKEVF
KTNGVIKYLGSGSRKLESVILRKLNFEAFVKELLLVKQYRVEVYRNHSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGTGGEGCAGVVAVRLSTGADGQRVVGVGYVDAAQRIMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSADGNKLREVVQRGGVLVSDRKRAEFSSKDIVQ
DLNRLLRSKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESHFNSFSLTTLELGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPTLIM
ALERDSGSYKVLLDAVFISPLADLQTDFIKYQEMIETTLDMNQIDHHEFLVKASFDPVLS
ELRERMDALEKSMQTVLNSAARELGLEAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRNREEYEEAQNAIVKEIIIIASGYVDPLQTLSDVI
AQLDAVASFAVASVSAPVPYVRPQLLDDGRRRLELLQARHPCMETDADTAFIPNDITFVQ
GERSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIVIDELGRGTSTYDGFGLAWAISEHIASKINCFCL
FATHFHELTCLATQQPSVYNLHVTALTSYNTLTMLYRVKPGVCDQSFGIHVAELACFPPS
VLAVARDKAEELEEFQEPAGDDSKQEEELEVKRRRTDKQVGENLIQDFLQKVKALPVATM
TEEEVKVDLRRMKQDLVAKNNTYISEILARCAPVKMA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgcagccgaagcagaaccagaacctgtcaatggacagcgcggccgaacatggc
tttctgaactttattttctccatgccggagaaaccggacaccaccttcaggatattcgac
cggaacgactactacaccgtccacgggaaggacgcgctatttgctgccaaggaggttttc
aagactaacggagtcatcaaatatctgggttcagggagccgtaagctggagagcgtgatc
ctacgcaagctcaactttgaggcctttgtgaaggagctgttgctggtgaagcagtataga
gtggaggtgtacaggaaccacagcaagagcagcaaggagcatgactggaggatcgagtat
aaggcctctccaggaaacttgacccagttcgaggacattctgtttggtggtggaaccgga
ggcgaaggctgcgcgggggtggtcgccgtacggttaagcacaggagccgacgggcagcga
gtggtcggggtcggctacgtggatgcggcccagaggatcatgggggtgtgtgagtttccg
gacaacgagatcttctccaacctggagtccctgctcgtccagatcagtcccaaagagtgt
cttttggctcagggtgaatgcagcgcggatgggaacaagctgcgggaggtggtacaacgt
ggcggtgtgctggtctctgacagaaagagagcagagttcagcagcaaggacatcgtccag
gatctcaacaggctactgagatctaagagaggagagactgtggcgagcaatacgctgccc
gaactggacaagcaggtcgccatgtcatgtttggctgcggtggtgcgattcctcgagctt
ctgtccgatgagtcccacttcaactcttttagcctcaccacattggagctgggtcagtac
atgaggctggacaacgctgccgtcagagctctcaacctcttccagggttcgcctgacgac
accagtggagctcattcattggctggtttgttgaacaagtgccgtactccacagggtcag
cggttggtcaaccagtggatcaaacagccacttatggacaaaaccaaaatagaggaaaga
ctagaccttgtggagagttttgtgtgcgattccgagctgagacagacttgtcaggaggat
ctgctgcgacgctttccagaccttcaccgcctggccaaaaagtttcaccgtcacacagcg
acgctgcaggactgctaccgcgtctaccaggccgttagccacatccccactctcatcatg
gctctggagagagactcaggcagctacaaggtgttgctggacgcggtgttcatctcgcct
ctcgcagacctacaaacggatttcatcaagtaccaggagatgattgaaaccactctggac
atgaatcagatcgaccaccacgagttcctggtgaaggcatcgttcgatcccgttttgagt
gagctgagagagaggatggatgcgctggagaaaagcatgcagactgtgctgaacagtgca
gccagagaattaggtctagaagctggtaaaactgtgaagctggagtccaacgccatgttg
ggcttctacctgagagtcacttgcaaggaggagaaaagtctgaggaacaacaagaagttc
accacgctggatgttcagaagaacggagtccgcttcacaaacagcaagctgagctctttg
aacgaggagtacaccaggaacagagaggagtacgaggaggcccagaacgccatcgtcaaa
gagatcatcatcatcgcctcaggttacgtggatccccttcagacgctgagcgacgtcatc
gcacagctcgacgcggtggcgagctttgccgtggcctccgtgtccgctccagtaccgtac
gtccggccccaactcctggatgatggccgcaggcgtctggagctgctgcaggccagacat
ccttgcatggagacggatgcagacaccgccttcatacccaacgacatcaccttcgtccag
ggggagaggagcttctatattataacaggaccgaatatgggtggaaagtccacgtttatc
cggcaggtgggtttgatcgcgctgatggctcagatcggctgcttcgtgccatgcgagaag
gcggagctcagtgtgattgacagcgtcctggcccgagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaactgctgccatcctgcgctcggcc
acggaaaactccctcatcgtcatcgacgagctcggcaggggaacctctacgtacgacggc
ttcgggctcgcctgggccatcagtgaacacattgcttccaaaatcaactgcttctgcctc
ttcgccacgcacttccacgagctgacatgcctagcgacgcaacagccgtccgtctacaac
ctgcatgtcaccgccctgacgtcatacaacacgcttacgatgctgtacagagtcaaacca
ggtgtttgtgaccagagttttgggatccacgttgctgagctggcttgcttccctccgtca
gtcctggcggtggcgagggacaaggcagaggaactggaggagttccaggaacctgcgggg
gatgattcaaagcaggaggaagagctagaggtcaagagacggcggactgataagcaagtg
ggagaaaacttgatccaggactttctgcagaaggtgaaggcacttcctgttgccaccatg
actgaggaggaggtaaaagtggacctcaggagaatgaagcaggatttggtcgccaaaaac
aacacgtacatcagcgagatacttgctcgctgcgctcctgtaaaaatggcctga
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