Girardinichthys multiradiatus (darkedged splitfin): 124874764
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Entry
124874764 CDS
T08099
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04518
Integrin signaling
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124874764 (col1a1b)
04518 Integrin signaling
124874764 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124874764 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124874764 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124874764 (col1a1b)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124874764 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
124874764
NCBI-ProteinID:
XP_047232232
LinkDB
All DBs
Position
10:complement(18625143..18648812)
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AA seq
1446 aa
AA seq
DB search
MFSFVDIRLALLLSASVLLARGQGEDDKQFGSCTSEGQLYNDKDVWKPEPCQICVCDMGT
ILCDEVICEDTADCDDPYIPDGECCPVCQSDGPFKETEIPKGPTGPNGDPGPPGPPGNDG
IPGQPGFPGPPGPPGPPGLGGNFSPQMSFFDPSKSSGPPMPGPMGLPGPRGPPGSPGPQG
PSGSQGPQGEPGEPGAVGPMGPRGSAGPPGKNGDDGESGKAGRPGERGPAGPQGARGFPG
TPGLPGIKGHRGFPGLDGAKGDSGPAGPKGEPGISGENGIPGAMGARGLPGERGRPGPSG
PAGARGNDGNTGPAGPPGPTGSAGSPGFPGGAGAKGETGPAGGRGSEGPQGSRGEPGNPG
PAGPTGPAGAPGSDGQAGAKGANGAPGIAGAPGFPGNRGPAGAQGGAGAPGPKGNSGDPG
TPGPKGEAGAKGEPGPAGLQGLPGPSGEEGKRGARGEPGGAGPRGAPGERGAPGGRGFPG
SDGAAGGKGAPGERGAPGPMGPQGASGEGGSPGAPGAPGSKGMTGSPGSPGPDGKVGPAG
APGQDGRPGPPGPAGARGQPGVMGFPGPKGTGGESGKAGERGPGGASGPVGAPGKDGDLG
APGPSGPAGPAGEKGEQGPSGAPGFQGLPGPQGSTGETGKPGEQGIPGEAGPPGQSGPRG
DRGFPGERGGPGPAGPIGPRGASGAAGNDGPKGEPGAAGTPGGVGPPGMQGMPGERGSAG
IPGAKGERGDGGGKGADGASGKDGMRGLNGAIGLPGPPGSQGEKGEPGPVGIAGPSGPRG
SPGERGETGPSGPAGFAGPPGADGQPGAKGESGDTGPKGDAGPSGPPGPVGSAGPQGPAG
ATGAKGARGGAGPPGATGFPGPAGRVGPPGPSGTAGPPGPVGPVGKDGPRGSRGETGPAG
RPGESGAVGASGPSGEKGSPGSDGAPGTPGIPGPQGIAGQRGIVGLPGQRGERGFSGTPG
PAGEPGKQGPSGLVGERGPPGPAGPPGLSGAPGEAGREGSPGHDGASGRDGAPGPKGDRG
ESGMAGPPGPPGAPGAPGAFGPSGKTGERGESGPAGPVGPSGIAGPRGSNGPAGAKGDRG
EAGEAGDRGHKGHRGLSGQPGLPGPPGTHGDRGPAGASGPAGPRGSSGNNGSPGKDGMNG
LPGPIGPPGPRGRNGEMGPSGPPGLPGPPGPPGPPGSAFEFVAPPQQEKGPDPLRGGYRA
DDPNMMRDRDMEVDTTLKTLTQKVEQIRSPDGSQKSPARMCRDLRMCQPEWKSGTYWVDP
NQGSPLDAIQVHCNMETGETCVYPIDSTIPMKNWYLSKNIREKKHVWFSESMTGGFQFQY
GSDGADPEDVNIQISFMRLMSNQASQNVTYHCKNSIAYMDSATGNLKKALLLQGSNDIEI
RAEGNSRFTYSVNEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPNQEFGIEV
GPVCFL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcgattagcgcttttgctcagcgcatcagtgcttttggcg
agaggtcaaggcgaggatgataagcaatttggcagctgcacatcagaaggacagttgtac
aacgacaaggatgtatggaaaccagaaccctgccagatatgcgtgtgcgacatggggacc
atcctgtgcgacgaggtgatctgcgaggacacagctgattgtgacgacccgtacatccca
gacggagagtgctgtcctgtctgtcaaagtgatggtcctttcaaagaaactgagattcca
aagggacccaccggccccaatggagatccgggtcctcctggtccccctggcaatgatgga
atccctggacagcctggttttcccggcccacctggcccccctggcccacctggccttggt
ggaaacttctctcctcaaatgagcttcttcgacccctcaaaatccagcggcccacccatg
cctggcccaatgggtcttcctggtccccgtggtcctcctggaagtcccggtccacagggt
ccttcgggtagccagggacctcaaggtgagcctggcgagcccggcgctgtgggtccaatg
ggcccccgtggttctgcaggccctcctggaaagaatggagatgatggtgagtccggtaaa
gctgggcgtcccggtgagcgcggacctgctggccctcagggtgctcgtggattccctgga
actcctggactccccggcatcaagggacacagaggtttccccggtctggatggagccaag
ggagacagtggacctgctggtcctaagggagaacctggtatttctggagaaaatggcatt
ccaggcgccatgggtgctcgtggtcttcctggtgagagaggccgccctggaccttctggc
cctgctggtgctcgtggtaacgatggcaacactggtcctgctggtcctcccggacctact
ggatctgctggatcccctggattccccggtggcgccggtgctaagggtgagaccggtcct
gcaggaggtcgtggatctgagggaccccagggatcacgtggtgagcctggcaacccagga
cctgctggacccactggacctgctggcgctcctggatctgatggtcaggctggtgctaaa
ggtgctaatggtgctcctggtatcgctggtgctcctggtttccctggcaaccgtggtcct
gctggagctcagggaggcgctggtgcccctggtcccaagggtaacagtggtgaccctggt
actccaggtcctaagggagaggctggtgccaagggtgagcctggcccagctggacttcag
ggacttcctggcccctctggtgaggagggaaagagaggagctcgtggagagcctggtggt
gctggaccccgtggtgcccctggagagcgtggtgcccctggtggtcgtgggttccctggt
tctgatggagctgctggtggaaagggtgccccaggtgagcgtggtgcccctggaccaatg
ggacctcagggagccagcggtgagggcggaagccctggcgctcctggcgctcccggatca
aagggtatgactggtagccctggaagccccggccctgatggcaaagtcggacccgctggt
gctcctgggcaagatggtcgtcccggacctcctggcccagctggagccagaggacagccc
ggagtcatgggattccccggacccaaaggaactggtggtgaatctggtaaagctggtgag
agaggtcctggtggagcttctggccctgttggtgctcctggtaaagatggtgatcttggt
gctcctggaccttctggccctgctggacctgctggagagaagggagaacaaggaccttcc
ggtgctccaggattccagggtcttcctggaccccaaggatctactggtgagactggcaag
cctggtgagcagggtattcctggtgaggccggaccacctggccaatctggacccagaggt
gacagaggcttccctggtgaacgtggtggtcctggacctgctggtccaattggacctcgt
ggtgccagtggtgctgctggtaacgatggacctaagggagagcctggtgcagctggcacc
cctggtggtgtgggaccccctggtatgcagggaatgcctggagagcgaggatctgctggt
atccctggggccaagggagagagaggagacggtggtggtaagggtgctgatggcgcctct
ggcaaagatggcatgcgcggtctaaatggtgctattggacttcctggacctcctggttct
cagggtgagaagggcgagcctggtcccgttggaattgctggaccctctggtcctcgtggt
tcccctggcgagcgtggagagactggaccgtcagggcctgctggatttgctggacctcct
ggtgctgatggtcagcctggtgccaagggagagagtggtgacaccggacccaagggagat
gctggtccttctggacctcctggacctgtcggatctgctggtcctcagggacctgctggt
gctactggagccaaaggtgctcgtggtggtgctggacctcctggtgctaccggtttccct
ggccctgctggcagagttggaccccctggcccttctggaactgctggaccccccggacct
gttggacccgttggaaaggatggacccaggggatctaggggtgagactggacctgctggt
cgtcctggtgaatctggtgcagttggtgcttcaggccccagtggggagaagggatcccct
ggctctgatggagcccctggtacccctggtatacctggaccccaaggaattgcaggacag
cgaggtattgtaggtctccctggacagcgtggagaacgtggtttctctggtacccctgga
ccagctggtgagcctggtaagcagggaccttctggcctcgttggtgagcgtggacccccc
ggacctgctggaccccctggactgtctggtgcccccggagaggctggtcgcgagggatct
cctggtcatgatggtgcttctggtcgtgatggagctcctggccccaagggagaccgtggt
gagagtggcatggctggaccccctggacctcctggtgctcctggagcccccggagctttt
ggtccctctggcaaaactggtgaacgtggagagagtggccctgctggtcccgtcggtcct
tctggcattgctggaccccgtggttccaatggccctgctggtgctaagggagacagagga
gaggccggtgaggctggagatagaggccacaagggacacagaggactcagcggccagcct
ggtctgcctggacctcccggaactcacggagacagaggacctgctggtgcctccggacct
gctggacccagaggatcttctggaaacaatggttcccctggtaaggatggcatgaacggt
ttgcctggacccattggaccccctggacctcgtggtcgcaatggagagatgggaccttct
ggacctcctggacttccaggaccccctggacctcctggaccccctggcagtgcctttgaa
ttcgttgccccaccccagcaggagaaaggccctgatcctcttcgtggtggctaccgtgct
gatgaccccaacatgatgcgtgatcgcgacatggaggttgacaccactctgaagaccctg
acccagaaggttgagcagatccgcagccctgatggctcccagaagagccctgctcgcatg
tgccgtgacctgaggatgtgccagcctgaatggaagagcggcacatactgggttgacccc
aatcagggctctcctctggatgccattcaggtccactgcaacatggagactggagagacg
tgcgtctaccccatcgattccaccatccctatgaagaactggtacctcagcaagaacatc
agagagaagaagcacgtctggttcagcgagtccatgaccggtggattccagttccagtac
ggcagcgatggagctgatcccgaggatgtcaacattcagatctccttcatgcgcctgatg
tccaaccaggcctcacagaacgtaacatatcactgcaagaacagcatcgcctacatggat
tctgccacaggcaacctgaagaaggccctccttctccagggctccaatgatatcgagatc
agagccgagggcaacagccgcttcacatacagcgtcaacgaggatggctgcacgtcacac
actggcacatggggcaagacagtcatcgactacaagacatcgaaaacatcccgactgcct
atcattgacattgctcctatggatgttggtgcacccaatcaggaatttggcattgaagtt
ggccccgtttgcttcttgtaa
DBGET
integrated database retrieval system
