Girardinichthys multiradiatus (darkedged splitfin): 124876261
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Entry
124876261 CDS
T08099
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124876261 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124876261 (pcf11)
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124876261 (pcf11)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124876261 (pcf11)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124876261 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
SHOCT
Motif
Other DBs
NCBI-GeneID:
124876261
NCBI-ProteinID:
XP_047234841
LinkDB
All DBs
Position
11:1499519..1512396
Genome browser
AA seq
1549 aa
AA seq
DB search
MDCLLLRGNGIGPAAVGLSGSLSWKMEDQAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENTQFAKDIVAIIEAQISKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLIPSFICV
FEKVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNSLDPAWPIKPLPPNINSSIHVNPR
FLKQSEEKASPQPVPAKPAPVAPAPQVAPATTPSSLTQEQLIRQQLLAKQKQLLELQQKK
IELELEQTKAQLVGQGGLVMPPSSTVPTPAESSTAQRPGNQNPPGIRPWIPPQPPTDSKS
STRDPRLNRSGPPGLPHLKEHPTAKRESPHPPGGPVVTTEKKVLEKSPRLDKARTPRKDV
LEDKLKSKSPSPLAKGLQSKSKQAEVENPKSIEAIKKDPRLKKRLQEKTGEVKDDELKEK
KRCIDKKEREEASRRPELLRSNKAKSVNGLMAKHDYMESSDKADLKAGGNGRRKRTCSRS
RSRSPAVSPKRKDRRSPKSHTRSSSLSPSHKPGKPRRVRGDDPQHGKLGREDRPAPKKIQ
SESRRPKRPQEDRQSRESHSPRGHDSGGKETKESLHRWRSGWEENKHMKLPEDSHTKSGP
PRHKPHSTPTRPSTPRNQKIRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEISQEDF
LNMAHQIKHFFQYQEEKQQRSENWEDPGDFSIKKQSLLNTPHEAMDAAELSYYEHKSKLR
KTQVNHRVTGDDGQETSEDGGEIRQGEKLGGSRSAGHPSLHAYSRPLQDRTGERRSKERD
EPRPPLAPMVEEYNHGKEFPKLKSLPGLRFRRRVDPGESSEREWTSPLTERQLYDEREEH
KSGYDAPRRYCPADTRRQDGPSPSTGAHRSSPAPVGLEAPAPRFERERLSPLHQKDLADM
SPVPRFESPNSEHSDEGPIDVPPPHPPHEGGHPPSRYSGPSHMGPSRPHHPGWYEGGGPG
RFEEPQFDGPHHPGPGRFDGGEPPHHNLSERTESSGPHEGLRMVMRGGGDGIGPLEGPPQ
GPNRFGGPIGQQQPVRFEGQMGGPGHLEGPLQRFDGPGHFNNMGPGPMGFQQQRSLRFEG
PNNQMGPIRFDGPSRFEGPGPGPRFDVPGGPHQPGPPRFDYPPGQQGPPRFPPQPNLQLP
MQPMAPPIYDNPITPQQNFGMAPQRFPEPMNPQFPPGPNMLPAGNFSMQPAPFSQPGPGP
FYNPAAPAIGMQQPVNMMGNMNQSFLPQNPVPFGQQTPQVAPQENHFGQVDVNDLLSKLI
SNGIIKPPSQTDSSQTASETSSTVPAPAGPVEEEEEEEPEVEEEEDLPDLTSFSVENMKQ
RYESVVTKLYSGNQCCLCSMRFTTTQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSL
TDWIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRATKDQVGELCEICQE
PFETYWVEEEEDWFLKNAVRVDDKNFHPACFEDYKNTSSYLDVTPSPSRLLTEHPLGALV
KTEEEEEEVTSCEVKQEVQSDPCCVAQQEEPGSTAQEVSADSAQSEDKA
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atggactgtctgctgctacgtggtaatggtatcggtccggctgctgtaggtttgtccggg
tctctgagctggaagatggaggaccaggcggccagggaagacgcctgcagggagtaccag
tcctcgctagaagacctgacgttcaacagcaaaccacacatcaacatgctcaccatcctg
gccgaagagaacacccagttcgccaaggatatcgtggctattattgaagctcaaatcagc
aaggccccggccgccgagaagctcccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcccttcatttatttgtgtc
tttgaaaaggtggatgaaaacactagaaagagcctgttcaagctgcgctccacctgggat
gaagtgttccccctgaagaagctgtatgccctggatgttcgggtcaactctctggacccg
gcatggcccatcaagccgctgccgcccaacatcaactccagcatccacgtcaaccccagg
tttctaaagcagtctgaggagaaggcctctccacagccggtcccagccaagcctgcaccc
gtggccccggcccctcaggtggccccggccaccaccccatccagcctgacccaggaacag
ctgatccgacagcagttgttggccaaacagaagcagcttcttgagctccaacagaagaag
atcgagctggagctagagcagaccaaagcacagctggtaggacagggcggattggtgatg
ccaccatcatctacggtgcccactccggcagaatccagcactgcacagagacccggcaac
caaaatcctccaggtatccggccctggatccctccccagcctccgaccgactcaaaatca
tctaccagagatccccgtctgaaccgcagcggccccccaggtttgccccatctcaaagaa
cacccaactgccaagagggagagcccccatccacctgggggccctgttgtcaccacagag
aagaaggtgctggagaaatccccccggctggacaaggccaggacccccaggaaagatgtt
ttagaagacaagttaaagtcaaagtctccatctccactggccaaagggttgcaaagtaaa
agcaaacaggcagaggttgagaacccaaaatccatcgaggccataaagaaggaccccagg
ctcaagaagcgactgcaggagaagacgggagaggtcaaagatgacgagctaaaggagaag
aaacgatgcatcgacaagaaggaacgagaggaggcttcacggagaccagagcttctgagg
tccaacaaagccaagtcagtaaacggcttgatggccaaacacgactacatggaatccagc
gacaaggccgacctcaaagccggaggcaacggccgcaggaaacgcacctgctcacggtcc
cgctcacggtcccccgctgtctccccaaaaaggaaggatcggcgttcacccaaaagccac
acccggagcagctccctgtccccgtctcacaagcccggaaaaccccggagggtccgcggt
gacgacccacagcatggcaaactgggtcgagaagacaggcctgcccctaaaaagattcag
tcagagagcaggaggccgaagaggccgcaggaggaccgtcagtccagggagtctcattcc
ccacgaggtcatgacagcggaggcaaggagacgaaggagtctcttcaccgctggaggagc
ggctgggaggagaacaaacacatgaagctgccggaggactcccacacaaagtctggacct
ccgagacacaaaccacacagcaccccaactcgtcccagcacccccagaaaccagaagatt
cgcctcagtgtggatgccaacctgcagatacctgaagtcctcaactccgcctccaagaag
gacctgctgaggagggccagcaagcgtctggagagcggggagatttcccaggaggacttc
ctgaacatggcccaccaaatcaaacatttcttccagtatcaggaggagaagcagcagcgc
tcggagaactgggaggaccctggagatttctccattaagaagcagtctctgctgaacaca
ccccatgaagccatggacgccgcagagctgtcatactatgagcacaagtccaagctgagg
aagacgcaggtcaaccacagagtcacaggcgatgatgggcaggagacttcagaggatggt
ggggaaataagacaaggcgagaagctgggaggtagccggagcgccggacacccttcgttg
cacgcgtacagtcgaccgctgcaagaccgaacaggagaaaggaggagcaaggagcgagat
gaaccgcgacccccgcttgcccccatggttgaagagtacaaccatggtaaagagttcccc
aagctgaagtctcttccaggtctccgcttcaggaggagagtggaccccggagagtccagt
gaacgggagtggacctcgccgctgacagagcggcagctttacgatgaacgtgaggagcac
aagagcggctatgatgctccacggagatactgcccggctgacacacgcaggcaggatgga
ccctctccttctaccggggcccacaggagctctccggctccagtcggattggaggctccg
gcccctcgctttgaacgggaacgcctgtcgcctctgcatcagaaagacttggcagacatg
agtccagtccctcgttttgaaagtcccaacagtgaacactcggacgaggggcccatcgat
gtcccccctccacatcctcctcatgaaggaggacaccctccctcacgttacagcggcccc
agtcacatgggcccctccaggccacaccacccgggctggtatgaaggcgggggccctggg
cgttttgaggagccacaatttgatggccctcaccacccagggcccggcaggtttgatggt
ggggagccgcctcatcataacctgtccgaaaggactgagagctctgggccccatgaggga
ctccgaatggtaatgagaggaggaggagatggaataggaccgcttgaagggcctccacag
ggacccaacaggtttggtggccctataggccaacagcagccagttaggtttgagggacaa
atggggggccctggtcacttggagggcccactgcagcgttttgatgggccagggcacttc
aataatatgggtcctggtccaatgggcttccagcagcagcggtccctccgctttgaaggc
cccaataatcagatgggtccaataaggttcgatggccccagtcgctttgagggtcctgga
ccaggtcccaggtttgacgtacctggtgggccccatcagcctgggcccccacgctttgat
taccctcctggccagcaggggccccccaggtttcctccgcaacccaaccttcagctccct
atgcagccgatggccccacccatctacgacaaccccataaccccccagcagaactttggc
atggccccccagcggttcccagagcctatgaacccacagttccctcccggaccaaacatg
ctgccggcaggaaacttcagcatgcagccagcaccattcagccaaccgggccccggtccc
ttctacaaccctgcagctcctgccattggcatgcagcagccggtgaacatgatgggaaac
atgaaccagtccttccttcctcagaacccagtgcctttcggacagcagactcctcaggtc
gcccctcaagagaaccacttcggtcaggttgatgtcaacgacctgctgtccaaactgatc
tccaacggaatcatcaaaccgccgtcgcagacggactcttcgcagaccgccagtgaaacg
tcttccacggtacctgctccagccggacctgtggaggaggaggaagaggaggagccggag
gtggaggaggaggaagacctgccagacctcaccagtttcagcgttgagaacatgaagcag
cggtatgagagcgtggtgaccaagctgtactcagggaatcagtgctgcctctgcagcatg
cgcttcaccaccacccagaccgacatgtacgccgaccacctggactggcacttcaggcag
aaccacgctgggaaggtggccagcaagaaggtgacacaccggcgctggtactacagcctg
acggactggatcgagtttgaggagatcgcggacctggaggagcgagccaagagtcagttc
ttcgagaaggagaacgaagaggaggtgcagaagaaccaggcggccgccaaggagaaggag
ttccagagcgtccgagccaccaaggaccaagtgggagagttgtgtgaaatctgccaggag
ccgtttgagacctactgggtggaggaagaggaggactggttcctgaagaacgccgtcaga
gttgatgacaagaacttccaccccgcctgcttcgaggattataaaaatacgtcttcctac
ctggacgtgactccgtctcccagcaggctgctgacggagcacccgctgggcgccttggtg
aagaccgaagaggaggaagaggaggtcacttcctgtgaggtgaagcaggaagttcagagt
gatccctgctgtgttgcacagcaggaggagccaggttctacggctcaggaggtttcagcg
gactctgctcagtccgaggacaaagcgtga
DBGET
integrated database retrieval system
