Girardinichthys multiradiatus (darkedged splitfin): 124876591
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Entry
124876591 CDS
T08099
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124876591 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmu01009
]
124876591 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmu04515
]
124876591 (pcdh1a)
Protein phosphatases and associated proteins [BR:
gmu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124876591 (pcdh1a)
Cell adhesion molecules [BR:
gmu04515
]
Cadherins
Protocadherins
124876591 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Syndecan
Motif
Other DBs
NCBI-GeneID:
124876591
NCBI-ProteinID:
XP_047235458
LinkDB
All DBs
Position
11:30463569..30662934
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AA seq
1194 aa
AA seq
DB search
MELNLRVVLFWVMALHCGSVNGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRSLAKGKPCYLEFEVSVTDLLQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSERNGVADYALTAGPDAATL
FGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVTDANDN
SPKFEKSSYDAELSENSPVGHSVLQVKANDSDMGPNGEIEYTIHQAVDPVPKLLRIDRST
GIIYVKGPLDREEISSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSPTDNRRKY
FLQTTTPLDFERVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPIFSPTLFEVDFA
EENQPGERVLDVTATDADSGTNAQLLYNIVADSTIRGLFEIDPNSGEVRARSPLDREHKE
RYEFWITAADKGSPSHKGTATVVVKVLDRNDNEPKFMLSGYSFSVLENMPPLSPVGMVTV
QDMDKGENARVHLSVEPDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPKS
SYVGVTINVLDENDNDPVITKPSNSSFRRLSPLASPDSHVEVVEAEDLDSGPNAELVFNI
AGGNPYQLFRISPTTGEITLAKEMTRKHGGLHRLVVRVSDRGKPPRHATALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDSGFAAHRSNILFGSLAGVAGVVMLILVVVFIRH
RLQRETKSGYQAGKKETKDLYAPKQAPKNAKGKRGRKGKPQKSTKALGENEEVGIQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQPKYNNKQHPHRRVTFSTTNPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDFPRDIRSLPDVA
MTGNCTTECSELGHSDACWMPGHPSPLRKTRNPPKLSTFVPYQERGSLGRLANGSARLVG
EELRSRLPPSRSAYSSSGQDAGLDCPVEEMPLSVASEFPPTSPSAHTPKREIYL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatttacgagtagtactgttttgggtcatggcactgcactgtggctctgtc
aatggcagtatcctctaccgggtccaggaggagcagccccccaacactctcataggcagc
ctggcagcagaccagggcctgccagattcaggtcacctctacaagctagaggtgggcgcc
ccttatcttcgagttgatgggaagacaggagacattttcactacagagattccaatagac
agagagaccctccgggactgtcggtccttggctaagggcaagccatgctacttggaattt
gaagtatcggtaacagatctgttacaaaaccagagcccacgacttattgaaggacgcatt
gaagtacaggacatcaatgacaacaccccacaatttccctcttctgtgctcaccatctcg
gtgcctgagaacacaatcatgggggcattattctccatacctctagccactgacagggac
tctgagaggaatggagtggccgactatgctctgactgcgggcccagatgctgcaacccta
tttggtttacaagttgctgatgacaggggagggaaactcccacagctcatagtccttggc
aatttggaccgcgagttaaaggattcatatgacctcaccatcaaagcggtggatggaggg
aaccctcagcgctacagcagtgctttgctcagggtggttgtgaccgatgctaacgataac
tcccctaagtttgaaaagtcttcatatgatgcagaactttcagaaaacagtccagtggga
cactccgtgttacaggtcaaagcaaatgactctgacatgggccccaatggagaaattgaa
tacaccattcaccaagcagtcgacccagtgccaaaactcctacgaattgatcggtctacc
ggcattatctatgtcaaaggaccactggacagggaggaaatcagcagcttgtccttctat
gtggtggcaagggataagggtcctcaacctaagagctctaagacgtttgtaactattgaa
gtgactgatcaaaatgacaatgctcctgcagtggaaattcgtggaattggtctcgtgact
cacagtgaaggagtggctaacatttcagaggacatgccagttgggacagctgttgctttg
gtgcaagtgtctgacaaagacgaaggagaaaatgctgtggttacttgcgtggtagcagga
gatgtgccctttcagcttcgtcctgccagtgactctcccactgacaacaggagaaaatat
tttcttcagacaactacaccacttgactttgagagagtcagggaatacagagtagaaatt
gtcgcagtggattctggaaacccagcactgtccagcacaaactccctaaaggtgcaggtg
actgacgtgaatgacaactccccaatattttccccaaccttatttgaggttgattttgct
gaagaaaaccaaccaggtgagagggttttggatgtcactgctacagatgctgacagtggc
actaatgcccaactcctatataatattgtggcagactcaaccatcagaggcttgtttgag
attgaccctaactcaggtgaagtaagagctcgaagcccactggatcgtgaacataaagag
cggtatgagttttggatcacagcggcagataaaggttcacctagccataaaggaacagca
acagttgtggtgaaagttcttgaccgcaatgacaatgagccaaagttcatgcttagtggt
tacagcttttcagtattggaaaacatgcctcctctaagtcctgtcggcatggtgacggtt
caagatatggacaaaggtgagaatgctcgtgttcacctctctgtagaacctgatggaggg
aagtttgtagtacaaaatggaacaggtaccattctctcaagcatctcattcgacagagaa
aaagaaagtagctatactttccgtctaaaggcagtggatgggggagaaccacccaagtcc
tcctatgttggtgtcactatcaatgtactggatgaaaatgacaatgaccccgttatcaca
aagccctccaattcctccttcaggcggttatcacctctagcatccccagacagccatgtt
gaggtggtggaggctgaagacctggacagtgggccaaatgcagagctagtcttcaatatt
gctgggggaaatccttaccaattattccgcatctcccccactacaggagagatcactcta
gcaaaggagatgacccgcaaacatgggggactgcatcgtctagtggtgcgggtgagtgac
aggggaaagcctccacgccatgctactgctctggttcacatctatgtcaatgaaacaatt
tcaaatgtcagtttagtggaagccttagttggacacagtctatacactccactagacaga
gacattgcaggcgatcctgacagtggttttgctgcacatcgcagtaacattctgtttgga
agccttgctggcgtggcaggagttgttatgctgatcttggtggtggtgtttattcgacac
cgccttcagagagaaacaaagagtggctatcaggcaggtaaaaaagaaacaaaggaccta
tacgcccccaagcaggcaccaaaaaacgccaaaggcaaacgaggaagaaaaggcaagcca
cagaagtctacaaaggcacttggggaaaatgaggaggtcggcattcaaaagagtctaaag
tttaaccttgatggagtcaacgatagccctcgaatacacctgccattgacatattcaccg
ggaagccctgacatcggcaggcattaccgctccaactctcccttaccttctatccagctg
caagcccagtccccctcagcttctcagaagcaccaagccgtgcaggacctccctgcagcc
aacaccttcgttggaactggaggagatgacaactctaccggctcagaccagtactcagat
tacagctacaagaccagccaacccaagtataacaacaagcagcatccccatcgtcgcgtg
accttttcaaccaccaaccccgtgcaggacctgcaggacgcctcacagcatagctactat
gatagcggcttggaggagtcggagacccccagcagcaagtcttcatctggtcctcgcatt
ggacccctgaccctgcctgaggaccactacgagaggaccaccccagacggcagcattgga
gaaacagaacacccagaaaacgatttccctagagatatccgctcccttcctgatgtggca
atgactggaaactgcacaaccgaatgcagcgaattgggtcactcagatgcctgctggatg
ccgggacatccctcccctctgcggaagaccaggaacccccccaagctctccacattcgtg
ccttaccaggagagagggagtctggggcgcctggccaacggcagcgccaggctggttggc
gaggagctccggtcacgccttccgccctcccgcagtgcctattccagcagcggccaggat
gccggtctggactgccctgtagaggagatgcccctgagcgtggcctctgagttcccaccc
acgtccccttctgcccacactccgaaacgtgaaatttacctgtga
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