Girardinichthys multiradiatus (darkedged splitfin): 124876730
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Entry
124876730 CDS
T08099
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03030
DNA replication
gmu03420
Nucleotide excision repair
gmu03430
Mismatch repair
gmu03440
Homologous recombination
gmu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124876730
03420 Nucleotide excision repair
124876730
03430 Mismatch repair
124876730
03440 Homologous recombination
124876730
03460 Fanconi anemia pathway
124876730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmu03000
]
124876730
03032 DNA replication proteins [BR:
gmu03032
]
124876730
03400 DNA repair and recombination proteins [BR:
gmu03400
]
124876730
Transcription factors [BR:
gmu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124876730
DNA replication proteins [BR:
gmu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124876730
DNA repair and recombination proteins [BR:
gmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124876730
MMR (mismatch excision repair)
124876730
DSBR (double strand breaks repair)
HR (homologous recombination)
124876730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
SOG2
Motif
Other DBs
NCBI-GeneID:
124876730
NCBI-ProteinID:
XP_047235671
LinkDB
All DBs
Position
11:complement(20563989..20620164)
Genome browser
AA seq
679 aa
AA seq
DB search
MTLELTRGAVEALFKGSQINNPVLQLLNIRQISNNTGPPRYRLMMSDGQHLLSSFLLATQ
LNHLAEDNLLVPQCVCMLRRTTTNTLSDGRQVVVVVEMKILKSAEEAGGKIGNPTPYLTD
GKLSSPHKLSSTTSEPASASAAEVPGPSSTNNNNKDWRTGFMGKAPMKTSTMMVSPMKTS
PMKGSSMMVSPIKTSPMKGSSMMVSPMKTSPMKGSSMMVSPLKTSPMKGSPMKTSPMKAT
TSLPGSIPKSIPIATLNPYTSKWTIKARVTKKTEIRNWSNSKGDGKLFSFEIVDESGEIR
ITAFNNEVDRFFSLVEQGKVYYISKGTLKVANKQYTTLKNDYEMTLNAYSSIVPCEDSPG
IPTVQCDFVPIEELENRDKDAIIDVIGVCKSADSVSRITTKASREVSKRAINLIDTSGKV
VTVTLWGEEAEKFDDSGQPVVAIKGARLSDFGGRSLSVLFSSTIMVNPDIPEAFRLRAWY
DQEGYAVDSQSLTETMSRSIGSKMNWRMLSDVKNENMGHGEKAEYFSCVATVVYMRKENC
LYRACPSGDCNKKVIDQQNGFYRCEKCNREFPNFRYRLLLSANLADFGDNQWVTCFQETA
EVLLGRNAEELGQLRETDEAEFDEVFQKANFTTHIFKNRVKLETYNDESRVKVTVMEVLP
VDHREYSRRLLSNIQKLTR
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgactctagaactgacacggggggcagttgaagccctcttcaaaggatcccaaataaac
aatccagtgttgcagttactgaacatccgtcagatcagtaacaacacaggcccacccagg
taccgcctcatgatgagtgatggtcagcacttgttgtcttcgttcctgctggccacccag
ttgaaccatctggcagaagacaacctccttgtaccacagtgtgtgtgtatgctgaggagg
accaccactaacacgttgtctgatggccggcaagtagtggttgttgtggaaatgaagatc
ttgaagtcagcagaagaagctggaggaaagattggaaatcccactccatatttgacagat
ggaaagctgtcatctccacataagttgtcatcaaccacctctgaaccagcctccgcttca
gccgctgaggtacctggaccctccagcaccaacaacaacaacaaagactggagaacaggt
tttatgggaaaggctcccatgaagacctctaccatgatggtttcacccatgaagacctct
cccatgaaaggctcttccatgatggtttcaccaattaagacctctcccatgaaaggctct
tccatgatggtttcaccaatgaagacctctcccatgaaaggctcttccatgatggtttca
ccactgaagacctctcccatgaaaggctctcccatgaagacctcacctatgaaggccacc
accagtttaccaggttccatcccaaaatcgatcccgattgctaccctcaacccttacacc
agcaagtggactatcaaagccagagtcacaaagaaaactgaaatccgtaactggagtaac
tccaaaggggacggcaagctcttctcctttgagatagtggatgagagtggagaaattagg
atcacagccttcaacaacgaagtggacaggtttttctctctggtggagcaaggcaaggta
tactacatctcaaaaggtactctgaaggtagccaacaaacagtatacaacgttgaagaac
gactacgagatgaccctcaatgcttattcatccattgtgccttgtgaggacagcccgggc
atcccaacagtgcagtgtgactttgtgcccattgaggaactggaaaaccgtgacaaagat
gccatcattgatgtaattggagtgtgcaagagtgcagatagtgtgtcccgtatcaccact
aaggccagcagagaagtctccaagagggccatcaacctaatagacaccagtggcaaagtg
gtgacagtcacactgtggggagaagaggcggagaagtttgacgactcaggacagcctgtt
gttgccatcaaaggagctcgcttgtctgattttgggggcagatctctctcagttttgttc
agttcaacaatcatggtcaatccagatatacccgaagccttcaggctcagggcttggtat
gaccaggaaggttatgcagttgacagccagtcattaacagaaaccatgtcaagaagcatt
ggatcaaagatgaactggagaatgctcagcgatgttaagaatgaaaacatggggcacgga
gagaaggcagagtattttagctgcgtggcgacagtggtatacatgcgtaaagagaattgt
ttgtatcgggcctgtccatccggtgattgcaacaagaaggtcatagaccaacagaacggt
ttttaccgctgtgaaaagtgtaaccgagagttccccaacttcagatatagacttctactt
tcagctaacttggcagacttcggggataaccagtgggtgacatgcttccaggagacagct
gaggtcctgctgggtcgcaacgcagaagagctgggacagctcagagaaaccgacgaggca
gagtttgatgaagtcttccagaaagccaacttcaccacccacatctttaaaaaccgtgtt
aagctggagacgtataatgatgagagtcgggtgaaggtgaccgtaatggaggtgcttccc
gtcgaccacagagaatacagcaggcgactactcagtaacatccagaaattgactcgctga
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