Girardinichthys multiradiatus (darkedged splitfin): 124878031
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Entry
124878031 CDS
T08099
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
124878031 (ptch1)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
124878031
NCBI-ProteinID:
XP_047237718
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All DBs
Position
12:25842439..25921103
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AA seq
1554 aa
AA seq
DB search
MASAANAPSELENGDPDRPRITRRNRGDYTRGTPLDLEYLQRPSYCDAGFALEQISEGKA
TGRKAPLWLRAKFQRFLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV
EVGGRVNQELKYTRQKMGEEAMFNSQLMIQTPREEGANVLTVEALLQHLESALRASRVHV
YLYNRQWKLEHLCYKSGELVTETHFMNQIIEKLHPCLIITPLDCFWEGAKLHSGMVYLPG
ENTVQWTTFDPKKCLEKLRKANIPVESFEDMLEKADVGHGYMDRPCLNPADPDCPDTAPN
KNSTKPFNAALALSGGCHGVSRKYMHWQEELIVGGTTKNGSGPLLSAQALQTMFQLMTPK
QMFEHFQDHEEVSHINWNEEKAEAILEAWQRRYSEAVLHSVAANSSQKVLSFTTTTLEDI
LKSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREERRFDI
FCCFYSPCANRVIQIEPQAYLDGADAGRYSPPPSYRTAPPSYRTPPPSYISHSFAQQTQI
TMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPINPVPMRGNHSGDYYNNNNNNISSNTI
NSRGSNLSNNNGSRGNGGSAAFGHHYPAPASSGCTVPQADSASTTSQSPENNSSTRDLLS
QIGESSIGLRCLEPSCSRWTLASFAEKHYAPFLLRPTTKVVVIMLFLGLLGISLYGTTQV
RDGLELTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRADYAQSQLLLHQLHQRFHTIRY
VLKEDNGQLPRMWLHYFRDWLQGLQQAFDKDWEAGCITVSSYRNGSDDGVLAYKLLVQTG
RRDKPINFSQLTRQRLVDADGIINPGAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHD
RTDSMPETRLSIPAAEPIEYSQFPFYLNGLRETPQFVEAIESVRAICTNYSRQGLPSYPN
GYPFLFWEQYVSLRHWLLLSISLVLACTFLVCALFLLNPWTAGIIVLVLSLMTVELFGFM
GLMAIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDHHKRAVLALEHMFAPVLDGAF
STLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSPADGRS
RLPTPCPEAPPRVVHFSVRPHQTSGPVTNAGAATDSSDSEYSSNATVSGISQEVQNYNLY
THRGHTQTEEQHNNLRTTRGRASRTEEERRAGSGQRCSPRQQSDPPPYNMSSGFDSGFQH
GITQPNGSRDPRGQQHWQASPPAHPRIDAFETATEAGGHHGSRSYREHSAGHSAHSSHNS
QPHHHQQHHHHLPHQNTNNAPFCQPITTVTASASVTVAVHPAPFSGQGPVSSFPEYTATD
SYCPSGPQEPEPAFQDPHVPLYTHTGTREAKVETVELQDLESEAAERNHSRRAS
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgctaatgcgccctccgagctggaaaacggagaccccgatcggccgagg
ataacgcggagaaacaggggggactatacccgcggcacaccgctggatttggagtatttg
cagcggccgagttactgcgatgcgggcttcgctctggagcaaatctcagaggggaaggcg
actgggaggaaagcacctctgtggctgagagcgaagttccagagatttttattcaggctc
ggctgttacatacaaaagaactgtggaaagtttttggttgtgggccttatgatttttgga
gcttttgccgtgggtttaagggcagctaatctggaaacggatgtggagaaactctgggtg
gaagttggtgggcgtgtcaaccaggaactgaaatacacacgacagaagatgggggaggag
gccatgtttaattctcagctgatgatccagacgccgcgggaggagggagccaacgtccta
acggtagaggcccttctgcagcacctggagtcagctctccgagccagcagagttcatgtt
tacctttataatagacaatggaaattggaacatttatgctacaaatcaggagaattagtc
acagaaacgcattttatgaatcagataatagaaaaacttcatccctgcctcatcatcacc
cctttggactgtttctgggaaggagctaaactccactctggaatggtctatctcccaggt
gagaacactgtacaatggaccacttttgacccgaagaagtgccttgaaaagttacgaaaa
gcaaacattcctgtggaaagctttgaggacatgttggaaaaggcggatgtcgggcatggc
tacatggatagaccctgtcttaaccctgctgaccctgactgccctgacactgcacccaat
aagaactcaactaagccattcaatgcggcgctggctttgagtggtggctgccatggtgtg
tccagaaagtatatgcactggcaggaggaactcattgtaggaggcaccacaaagaatggc
agcggacccctactcagtgcccaggctttacagaccatgttccagctgatgacccccaag
cagatgtttgagcactttcaagaccatgaagaggtttcccacatcaactggaatgaagaa
aaggctgaagcaatactggaggcctggcagaggagatactctgaggcagtgctgcacagt
gtggcagcgaattcatcccagaaggtcttatccttcaccaccaccactctggaggatatt
ctcaagtctttttctgacatcagtgttatccgtgtggccagtggatacttgctgatgctg
gcctatgcatgtctgaccatgctgcggtgggactgtgccaagtctcagggtgccgtcggg
ctggccggcgtcctgctggtgacgctgtctgtggcggctggtctgggcctttgttctctc
ctgggaatctcctttaatgctgccaccacgcaagttcttcctttcctggctctgggagtc
ggagtggatgatgtctttctcctcgcccatgccttcagtgagactggacagaacaagagg
attccattcgaggaccgtacgggggagtgcctgaagaggacaggggccagcgtggctctc
acctccatcagcaacgtcacggccttcttcatggcggccctcatccccatcccagcactt
cgagctttttctctgcaggccgcagtggtagtggtgtttaattttgccatggtgctgctc
atctttcctgccatcctcagcatggatctctaccgacgagaagaaaggcgctttgacata
ttctgctgcttctacagcccatgtgccaatcgagtgattcagatcgagcctcaggcgtac
ctggacggagcagatgcaggacgctacagccctccgccatcgtatcgcacagctcctcct
tcctatcgcacgcctcccccgagctacatcagccacagcttcgcccagcagacccaaatc
actatgcagtccacggtgcagctcaggacagagtatgacccccgcacccaagccttctac
accacagccgagcccaggtcacagatctctgtgcagccgatcaacccggttccgatgagg
ggaaaccacagcggtgactattacaataacaacaacaacaacatcagcagcaacaccata
aacagccgtggcagcaatctcagcaacaacaatgggagcagaggtaatgggggctctgcc
gccttcggccatcattatcctgcgcccgcatccagcggctgcacagttcctcaggctgac
tcagcctcgacaaccagccagagtccagagaacaacagctccacgcgggacctgctgtct
cagatcggagagtcctcgataggcttgcgctgccttgagccctcctgctcgcgctggacc
ttggcctctttcgctgagaagcactatgctccgttccttctgcgacccaccaccaaggtg
gttgtgattatgctattcctgggcctgctgggaatcagtctgtacgggaccacccaggtg
cgggacggcctggagctgacagacatcgtgcccagagaaaccagcgagtacgacttcatc
ggcgctcagttcaagttcttctccttctacaacatgtacgtggtgacgcagcgggccgat
tacgcccagagccagctgctcttgcaccagctccaccagaggttccacaccattcgctat
gtgttgaaggaggacaatggccagctgccccgcatgtggctccactacttcagggactgg
ctgcaaggactccagcaggcatttgacaaggactgggaggccggttgtatcaccgtcagc
agctacaggaatggttctgatgatggtgtcctggcttacaaattgctggtgcagacagga
cgcagggacaaacccatcaacttcagccagctgactcgacagagacttgtggatgcagat
ggtatcatcaatcctggggctttttacatctacctaaccgcttgggtcagcaatgatccc
gtcgcgtatgctgcctcacaggccaacatccgtccgcaccctcctgagtggctccacgac
cggactgactccatgcccgagacgcgtctcagcattcccgctgctgagcccatcgaatac
tcacagttccccttctacctcaacgggctccgggagaccccgcagtttgtggaggccatc
gagagcgtgcgggcaatctgcaccaactacagccgacaaggccttccctcctaccccaac
ggctaccctttcctcttctgggagcaatacgtcagcctgcgtcactggcttctcctttcc
atcagccttgtgcttgcctgcacctttctggtctgtgccctgttcctgctcaacccgtgg
accgctggcatcatagtgcttgtgctctctctcatgactgttgagttgttcggcttcatg
ggactaatggcaatcaagctcagcgccgtccctgttgtcattctcatcgcctcagtaggc
attggggtggagtttactgttcatgtggctctggctttcctgacagccataggggatcac
cacaaacgggcagtgctggcactggagcacatgttcgctccggtgctggatggagccttc
tccacattactgggtgtcctaatgcttgcaggctctgagttcgactttattgtcaggtat
ttctttgcagtattagccatcctaacagttcttggagtactgaacggattggtccttctc
ccagtattactctcatactttggaccttatccagaggtttcaccagctgatggccgtagt
cgattacctaccccctgcccagaggcccctcctcgagtggttcatttctcggtccgtcct
caccaaacctctggacccgtcacaaacgcaggtgctgccacggattcatcagactcggag
tacagctctaatgctacagtgtctggaattagccaagaggtgcagaactacaacctttat
acacacagaggacacactcaaacagaagagcagcacaacaacctccgaaccaccagagga
agagcgtcccggacagaagaggaaaggagagcagggtcaggacaacggtgttcaccgaga
cagcagtctgaccccccaccctataatatgtcttcgggttttgattctgggttccagcac
ggcattactcagccaaacggcagcagggaccccaggggccagcagcactggcaggcctca
cccccagcccacccgcgcattgacgcttttgaaactgctaccgaggctgggggccaccac
ggctctcgcagctacagagaacattcagcaggccacagtgctcactcctcccacaactca
caacctcatcatcaccaacagcatcatcaccacctcccgcaccaaaacaccaacaatgct
cctttttgtcagcctattaccacagtgacggcatcagcctcggtcactgtagccgttcac
cctgccccattctccggccaaggtccagtttcctccttcccagaatacactgcaacagac
agttactgcccatcggggccacaggagccagaaccagcctttcaggaccctcacgtgcct
ctgtacacccacacagggactagggaggccaaggtggaaactgttgagctccaagatttg
gaatcggaggcagctgagaggaaccacagcagacgggcaagctga
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